Merge pull request #13 from elixir-luxembourg/develop

Develop
elixir-luxembourg · May 16, 2020 · 8cb933a · 8cb933a
2 parents a175861 + e45146a
commit 8cb933a
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Showing 14 changed files with 16 additions and 9 deletions.
diff --git a/.gitmodules b/.gitmodules
@@ -1,9 +1,9 @@
-[submodule "session_3_ds-wizard"]
-	path = session_3_ds-wizard
+[submodule "practical_dsw"]
+	path = practical_dsw
 	url = [email protected]:elixir-luxembourg/dsw-practical.git
-[submodule "session_4_daisy"]
-	path = session_4_daisy
+[submodule "practical_daisy"]
+	path = practical_daisy
 	url = [email protected]:elixir-luxembourg/daisy-practical.git
-[submodule "session_6_snakemake"]
-	path = session_6_snakemake
+[submodule "practical_snakemake"]
+	path = practical_snakemake
 	url = ssh://[email protected]:8022/R3/school/snakemake-tutorial.git
diff --git a/README.md b/README.md
@@ -88,6 +88,13 @@ The course is made up of seven sessions covering:
 * Exercises and discussion
 
 ### Session 5 Exploratory analyses, reproducible manuscripts
+* Data and project organization for analysis
+* Literate programming 
+* Writing manuscripts using RMarkdown
+  * Introduction
+  * Worked example from Chip-Seq
+  * Lessons learned
+
 
 ### Session 6 FAIR data principles
 

diff --git a/practical_daisy b/practical_daisy
diff --git a/practical_dsw b/practical_dsw
diff --git a/practical_snakemake b/practical_snakemake
diff --git a/session_1_introduction/.gitkeep b/session_1_introduction/.gitkeep
diff --git a/session_2_research-data-lifecycle/.gitkeep b/session_2_research-data-lifecycle/.gitkeep
diff --git a/session_3_ds-wizard b/session_3_ds-wizard
diff --git a/session_4_daisy b/session_4_daisy
diff --git a/session_5_data-ingestion/.gitkeep b/session_5_data-ingestion/.gitkeep
diff --git a/session_6_snakemake b/session_6_snakemake
diff --git a/session_7_FAIR-principles/.gitkeep b/session_7_FAIR-principles/.gitkeep
diff --git a/session_8_exploratory-analyses-and-reproducible-manuscript/.gitkeep b/session_8_exploratory-analyses-and-reproducible-manuscript/.gitkeep
diff --git a/session_9_publishing-and-archival/.gitkeep b/session_9_publishing-and-archival/.gitkeep