Skip to content

Commit

Permalink
Update pages/your_domain/human_pathogen_genomics.md
Browse files Browse the repository at this point in the history
Co-authored-by: Marina Popleteeva <[email protected]>
  • Loading branch information
bianchini88 and marikapop authored Oct 23, 2024
1 parent ac5984c commit 90a1caa
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion pages/your_domain/human_pathogen_genomics.md
Original file line number Diff line number Diff line change
Expand Up @@ -113,7 +113,7 @@ While the objects of interest in this domain are pathogens, the data is usually
* [High-Throughput Sequencing \| LifeScienceRDMLookUp](https://elixir.no/rdm-lookup/sequencing).
* The [Beyond 1 Million genomes project](https://b1mg-project.eu/) provides guidelines that cover the minimum quality requirements {% cite "gut2021B1MG" %} for the generation of genome sequencing data.
* Data repositories generally have information about recommended [data file formats](data_publication) and [metadata](metadata_management).
* The {% tool "fair-cookbook" %} provides instructions on [validation of file formats](https://faircookbook.elixir-europe.org/content/recipes/interoperability/fastq-file-format-validators.html)
* The {% tool "fair-cookbook" %} provides instructions on [validation of file formats](https://faircookbook.elixir-europe.org/content/recipes/interoperability/fastq-file-format-validators.html).
* A good place to look for scientific and technical information about data quality validation software tools for pathogenomics is {% tool "bio-tools" %}.
* The {% tool "idtk" %} has a showcase on [An automated SARS-CoV-2 genome surveillance system built around Galaxy](https://www.infectious-diseases-toolkit.org/showcase/covid19-galaxy).
* The Galaxy Training Network provides free online [training materials on quality control](https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html).
Expand Down

0 comments on commit 90a1caa

Please sign in to comment.