Validation of the tools and page metadata #861
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name: Validation of the tools and page metadata | |
on: | |
pull_request: | |
branches: [ master, main ] | |
schedule: | |
- cron: '0 13 * * 1' | |
workflow_dispatch: | |
jobs: | |
validation: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [3.8] | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install ruamel.yaml requests python-frontmatter | |
- name: Run tool table 2 yaml | |
run: | | |
python var/tools_validator.py | |
registry-lookup: | |
if: | | |
github.repository_owner == 'elixir-europe' && github.event_name != 'pull_request' | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [3.8] | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install ruamel.yaml requests python-frontmatter | |
- name: Run regsitry lookup for the tools file | |
run: | | |
python var/tools_validator.py --reg --username ${{ secrets.FAIRSHARING_USERNAME }} --password "${{ secrets.FAIRSHARING_PASSWORD }}" | |
- name: Show differences | |
run: | | |
git diff --stat | |
- name: Create Pull Request | |
id: cpr | |
uses: peter-evans/create-pull-request@v3 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
commit-message: Update tool/resource_list.yaml | |
title: 'Automatic tool/resource-list update' | |
body: | | |
This PR is automatically generated based on new links made between the tools and the registries: TeSS, Bio.tools and FAIRsharing. | |
Please verify if these changes are valid. | |
labels: | | |
automatic PR | |
reviewers: bedroesb | |
branch: list_updates | |
base: main | |
- name: Check output | |
run: | | |
echo "Pull Request Number - ${{ steps.cpr.outputs.pull-request-number }}" |