This repository is meant for the participants of the BioHackathon hosted near Paris in November 2022 to share ideas, create issues, manage projects, publish materials, create code, etc.
- Project 1: Alignment of food and nutrition study data
- Project 2: APICURON integration with curation databases
- Project 3: Bioinforming
- Project 4: BioHackrXiv
- Project 5: Bioschemas - Enabling profile updates through the Data Discovery Engine (DE)
- Project 6: Building a robust and reproducible assembly and annotation pipeline for non-model eukaryote genomes
- Project 7: Connecting and visualizing FAIR data with TogoID and MetaStanza
- Project 8: Developing a lesson for the ELIXIR Software Management Plan
- Project 9: Disseminating FAIR Machine Learning Models via BioModels
- Project 10: Enhance RDM in Galaxy and DSW by utilising RO-Crates
- Project 11: Enhancement and Reusage of Biomedical Knowledge Graph Subsets
- Project 12: Empowering the community with notebooks for bespoke microbiome analyses
- Project 13: Exploring the landscape of the genomic wastewater surveillance ecosystem: a roadmap towards standardisation
- Project 14: FAIR knowledge representation for user facing applications
- Project 15: Infrastructure for Synthetic Health Data
- Project 16: Make your own or favourite software available on your cluster with EasyBuild/EESSI
- Project 17: Metadata schemas supporting Linked Open Science (with a focus on reproducibility)
- Project 18: MOWL: A library for Machine Learning with Ontologies
- Project 19: Nightingale 4.0 - Reusable web components for accelerating end-users access to tools platform metadata
- Project 20: Onboarding suite for Federated EGA nodes
- Project 21: Operator dashboard for controlling the NeIC Sensitive Data Archive
- Project 22: Plant data exchange and standard interoperability
- Project 23: Publishing and Consuming Schema.org DataFeeds
- Project 24: Quantitative bias assessment in ELIXIR - EuropePMC biomedical publications resources
- Project 25: Scientific and technical enhancement of bioinformatics software metadata using the Tools Ecosystem open infrastructure
- Project 26: Shedding the light on unknown chemical substances
- Project 27: Streamlining data brokering from RDM platforms to ELIXIR Repositories
- Project 28: Support for the Common Workflow Language standard version 1.2 in Galaxy
- Project 29: Supporting federated secure workflows and analysis using WfExS-backend
- Project 30: The ELIXIR::GA4GH Cloud - Admin and User Engagement
- Project 31: The What & How in data management: Improving connectivity between RDMkit and FAIR Cookbook
- Project 32: Training booster: developing FAIR training materials and Learning Paths
- Project 33: Training Systems biology curators in building interoperable and reusable models following a learning path approach
- Project 34: Using Federated Public Data for Disease Subtyping and Prediction of Effective Treatments
- Project 35: Workflow Execution Service to help the quality improvement of published workflows