Work on binder

Fix also cartopy features link Make sure itkwidgets work Force Jupyterlab2 Fix Tutorial Notebooks Make sure mayavi works
ec-jrc · Mar 6, 2022 · 454b2e1 · 454b2e1
1 parent ad74a58
commit 454b2e1
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Showing 8 changed files with 145 additions and 116 deletions.
diff --git a/Tutorial/BOUNDARY.ipynb b/Tutorial/BOUNDARY.ipynb
@@ -2,15 +2,15 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "f0982aea",
+   "id": "8f52acbc",
    "metadata": {},
    "source": [
     "# The Boundary module"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "94e3d0bc",
+   "id": "cab59e78",
    "metadata": {},
    "source": [
     "This module handles mesh boundary extraction from coastlines or user provided shapefiles. It underpins the [MESH](MESH.ipynb) module.\n",
@@ -24,7 +24,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "facd7989",
+   "id": "f6a3107a",
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@@ -36,7 +36,7 @@
   {
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    "execution_count": null,
-   "id": "36ebbaea",
+   "id": "1d773816",
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@@ -48,7 +48,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "4ca41804",
+   "id": "2eb10c37",
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@@ -57,7 +57,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "1fde6b9b",
+   "id": "e8b9a2e7",
    "metadata": {},
    "source": [
     "### Graphics"
@@ -66,7 +66,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "0af0bb8a",
+   "id": "aa50be39",
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@@ -76,7 +76,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "0ee5fde0",
+   "id": "2dd5b8cb",
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@@ -86,7 +86,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "4edaaa7e",
+   "id": "a74cc6b0",
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@@ -96,7 +96,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "6c973e02",
+   "id": "267e7285",
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@@ -107,7 +107,7 @@
   {
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    "execution_count": null,
-   "id": "b8315cc8",
+   "id": "7990b431",
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    "outputs": [],
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@@ -118,7 +118,7 @@
   {
    "cell_type": "code",
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-   "id": "5bdcfc52",
+   "id": "631b9c7a",
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@@ -129,7 +129,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "0a78ff6c",
+   "id": "6656b7a2",
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@@ -139,7 +139,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "b41affaf",
+   "id": "9e882621",
    "metadata": {},
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@@ -151,7 +151,7 @@
   },
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-   "id": "86be9259",
+   "id": "76592c87",
    "metadata": {},
    "source": [
     "- In order to have within the Notebook the executable binaries installed in the conda env of the Kernel we add the corresponding path to the env `PATH`. This is not needed when we are running from python."
@@ -160,7 +160,7 @@
   {
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    "execution_count": null,
-   "id": "0e0d559e",
+   "id": "21fb8e63",
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@@ -172,7 +172,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "ea781840",
+   "id": "b1ffb7fd",
    "metadata": {},
    "source": [
     "## Coastlines"
@@ -181,7 +181,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "23dd6419",
+   "id": "9cad8061",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -192,7 +192,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "3f95b851",
+   "id": "d57eb9bd",
    "metadata": {},
    "source": [
     "Without loss of generality we are using the `GHSS` intermediate resolution dataset"
@@ -201,7 +201,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "0ece63c4",
+   "id": "50f7ecad",
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@@ -212,7 +212,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "6f1c3b92",
+   "id": "b02f1607",
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    "outputs": [],
    "source": [
@@ -221,7 +221,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "644e114f",
+   "id": "c3be0a46",
    "metadata": {},
    "source": [
     "## Case 1\n",
@@ -232,7 +232,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "4f7ebce5",
+   "id": "85ee16f9",
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    "source": [
@@ -247,7 +247,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "f5495489",
+   "id": "762fcf20",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -257,7 +257,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "6e52c851",
+   "id": "abe492b3",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -267,7 +267,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "fb617ac3",
+   "id": "349eac1a",
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    "source": [
@@ -277,7 +277,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "07064f4c",
+   "id": "f849c6ca",
    "metadata": {},
    "source": [
     "## Case 2\n",
@@ -288,7 +288,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "41e7140c",
+   "id": "2d7a2239",
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    "source": [
@@ -298,7 +298,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "4e2e87dc",
+   "id": "4f60b44e",
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    "source": [
@@ -307,15 +307,15 @@
   },
   {
    "cell_type": "markdown",
-   "id": "f95981e2",
+   "id": "a538cd90",
    "metadata": {},
    "source": [
     "*Note* that the global mesh is computed in a stereographic projection at lat=-90."
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "904bb7be",
+   "id": "42848ce0",
    "metadata": {},
    "source": [
     "## Case 3\n",
@@ -326,17 +326,17 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "ee554947",
+   "id": "08449b0c",
    "metadata": {},
    "outputs": [],
    "source": [
-    "boundary='/Users/brey/GitHub/pyPoseidon-dev/tests/data/bl.zip'"
+    "boundary='./data/bl/bl.shp'"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "ce14fecf",
+   "id": "9dd0979a",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -346,7 +346,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "da73d724",
+   "id": "e5ce95ed",
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    "outputs": [],
    "source": [
@@ -356,7 +356,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "e51b16d9",
+   "id": "86037055",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -365,7 +365,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "7ae445a9",
+   "id": "a87c94ec",
    "metadata": {},
    "source": [
     "## Case 4 \n",
@@ -376,7 +376,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "f6ef5a33",
+   "id": "2430f8c7",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -386,7 +386,7 @@
   {
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    "execution_count": null,
-   "id": "7f6f1b97",
+   "id": "d30fbaed",
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    "outputs": [],
    "source": [
@@ -396,7 +396,7 @@
   {
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-   "id": "86158576",
+   "id": "2218e8a4",
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    "source": [