Drop duplicate rows sometimes created by fastQTL

eQTL-Catalogue · Jun 8, 2020 · 1a32d34 · 1a32d34
1 parent bc37992
commit 1a32d34
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -451,7 +451,7 @@ process sort_qtltools_output {
 
  script:
  """
- gzip -dc $nominal_merged | LANG=C sort -k2,2 -k3,3n -S11G --parallel=8 | \\
+ gzip -dc $nominal_merged | LANG=C sort -k2,2 -k3,3n -S11G --parallel=8 | uniq | \\
  bgzip > ${study_qtl_group}.nominal.sorted.norsid.tsv.gz
  """
 }