ExoDeepFinder provides a GUI which enables to call each of the ExoDeepFinder commands:
edf_convert_tiff_to_h5 # convert tiff folders to a single h5 file
edf_segment # segment a movie
edf_generate_annotation # generate an annotation file from a segmentation by clustering it
edf_generate_segmentation # generate a segmentation from an annotation file
detect_spots_with_atlas # detect bright spots in movies with the Atlas detector
detect_spots # detect bright spots in movies (with any detector)
edf_merge_detector_expert # merge the expert annotations with the detector segmentations for training
edf_structure_training_dataset # structure dataset files for training
edf_train # train a new model
exodeepfinder # combine all above commands
Just uncompress and launch exodeepfinder.app (on Mac), exodeepfinder.exe (on Windows) or run exodeepfinder from a terminal (on Linux).
Changes: This new version better integrates with Atlas, the bright spot detector.