This directory contains the MACRO simulator with PfSI course of infection (CoI) module and Ross-Macdonald (RM) mosquito model. It allows user selection of Poisson or Negative Binomial biting with individual overdispersion for human agents, discrete trip movement model for humans, and diffusion-based movement for mosquitoes. It uses R's built in random number generator exposed through R's C API because of its known quality.
To install this package, please enter the following command in an R terminal: devtools::install_github(repo = "https://github.com/dd-harp/MASH",subdir = "macro.pfsi")
This software (R package) has the following pre-requisites:
- C++11/14 compatible compiler
RcppR packageRcppArmadilloR packageRcppProgressR package
This directory contains the MACRO simulator with PfMOI course of infection (CoI) module and Ross-Macdonald (RM) mosquito model. It allows user selection of Poisson or Negative Binomial biting with individual overdispersion for human agents, discrete trip movement model for humans, and diffusion-based movement for mosquitoes. It uses R's built in random number generator exposed through R's C API because of its known quality.
To install this package, please enter the following command in an R terminal: devtools::install_github(repo = "https://github.com/dd-harp/MASH",subdir = "macro.pfmoi")
This software (R package) has the following pre-requisites:
- C++11/14 compatible compiler
RcppR packageRcppArmadilloR packageRcppProgressR package
If you encounter problems with the Rcpp ecosystem for Mac OS, please see this guide (https://thecoatlessprofessor.com/programming/r-compiler-tools-for-rcpp-on-macos/) to fix most common problems. Also make sure R is running the latest version.
The cover image of the masher is from https://flickr.com/photos/smiling_da_vinci/. Thank you!