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39 Open 43 Closed
39 Open 43 Closed
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Issues list

Global_score
#106 opened May 7, 2024 by zjlclimb
what pdbx package does parse_cif_noX.py expect?
#105 opened May 2, 2024 by cseed
1
Sampling temperature for flexible chains
#104 opened Apr 24, 2024 by Davood-Norouzi
.Fa Output reorganization question
#103 opened Apr 24, 2024 by noah-c-noah-do
Questions about model weights
#100 opened Apr 17, 2024 by mh8859
RuntimeError: Class values must be smaller than num_classes. | protein_mpnn_utils.py & mask_size issue?
#99 opened Apr 4, 2024 by emilyrkang
What is the difference between --conditional_probs_only_backbone and --unconditional_probs_only
#97 opened Mar 25, 2024 by tsjain
Training time
#96 opened Mar 14, 2024 by sahamitul
1
Creates hydrophobic surface patches wit many Ala side chains
#95 opened Feb 29, 2024 by gha2012
2
Model is adding an amino acid to the original sequence
#92 opened Feb 26, 2024 by tony-res
5
Need of assistance and advising
#91 opened Feb 21, 2024 by Hanoriega
How do I use a PSSM with proteinMPNN?
#90 opened Feb 15, 2024 by proteins247
Amino acid sequence has too many "K/E"
#89 opened Feb 13, 2024 by kjogr12
2
Design complexes with unknown chains (proposed fix included)
#86 opened Feb 7, 2024 by SimonCrouzet
whether to redesign low confidence aas
#85 opened Jan 20, 2024 by 18217265596
Retrieve per-position scores or score a chain in the context of another
#84 opened Jan 19, 2024 by amin-sagar
Training model
#83 opened Dec 29, 2023 by luoyu5023
parse_cif_noX.py misses some chains in CATH?
#82 opened Dec 17, 2023 by tyang816
conditional_probs_only_backbone is ignored when used alone
#80 opened Dec 13, 2023 by TCoulth
Clarify 'design chains'
#78 opened Dec 5, 2023 by jadolfbr
1
Indexing with Missing Residues
#77 opened Nov 17, 2023 by brucejwittmann
4
From 2 distinct structure to a single sequence ?
#75 opened Nov 9, 2023 by PodevynLoris
4
Where is the LigandMPNN
#72 opened Oct 19, 2023 by chengyunzhang
2
question: prob vs log_prob matrices
#71 opened Oct 3, 2023 by agarrubio
limit to number of chains in homooligomers
#69 opened Sep 18, 2023 by acarbn
1
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