Currently make the following unisusie steps optional

[SamuelSun2000]

To avoid the job exit with errors, I currently muted the unisusie_2 and 3 by suggestion, it will not influence unisusie_1.

[review-notebook-app]

Check out this pull request on 

See visual diffs & provide feedback on Jupyter Notebooks.

---

Powered by ReviewNB

[gaow]

the patch does not look right ... you cannot make steps optional by just commenting them out -- that's what you did right ? (and without justificcations)

[SamuelSun2000]

1. why mask? what are you trying to achieve? 2. would we ever need to unmask them? 3. if 1 is justifiable and 2 is necessary, what would be the best way to do that?

1. Now if we run unisusie, it will return an error because unisusie_2 has issues. I blocked it so that people will not get confused, because unisusie_1 successfully yields output without error. Blocking currently is what @hsun3163 suggests to me.

2. I can see the function is to generate some vcf files. Hao knows the detail @hsun3163 could you plz explain that?

3. I'm providing two strategies at Remaining problem in unisusie pipeline #527

[gaow]

okay let me merge this then edit .. .