cumc xqtl-protocol Default Analysis Setting · Discussions · GitHub

Should genotype QC focus on samples passing phenotype QC?
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Default analysis setting Discussions

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Should we/when should we exclude chrM/X/Y in our analysis?

hsun3163 started Feb 17, 2022 in Default analysis setting

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RNA-seq calling default setting
help wanted Extra attention is needed question Further information is requested
gaow started Jan 31, 2022 in Default analysis setting

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VCF data QC default setting

gaow started Jan 31, 2022 in Default analysis setting

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PCA on genotype default setting

gaow started Jan 25, 2022 in Default analysis setting

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Genotype QC default setting

gaow started Jan 24, 2022 in Default analysis setting

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