add apex container #7
Workflow file for this run
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name: Build containers from conda environments | |
on: | |
pull_request: | |
paths: | |
- 'container/*/*.yml' | |
jobs: | |
setup: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
outputs: | |
matrix: ${{ steps.export-directories.outputs.matrix }} | |
any_changed: ${{ steps.changed-directories.outputs.any_changed }} | |
steps: | |
- name: Checkout pull request branch | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Get branch name | |
id: branch-name | |
uses: tj-actions/branch-names@v7 | |
- name: Get SHA of last commit to main branch | |
uses: nrwl/nx-set-shas@v3 | |
id: last_successful_commit_pull_request | |
with: | |
main-branch-name: ${{ steps.branch-name.outputs.base_ref_branch }} | |
- name: Get changed directories | |
id: changed-directories | |
uses: tj-actions/changed-files@v36 | |
with: | |
base_sha: ${{ steps.last_successful_commit_pull_request.outputs.base }} | |
dir_names: true | |
dir_names_exclude_current_dir: true | |
json: true | |
files: container/*/*.yml | |
- name: Export changed directories | |
id: export-directories | |
run: echo "matrix={\"context\":${{ steps.changed-directories.outputs.all_changed_files }}}" >> "$GITHUB_OUTPUT" | |
build_containers: | |
needs: setup | |
if: needs.setup.outputs.any_changed == 'true' | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: ${{ fromJSON(needs.setup.outputs.matrix) }} | |
steps: | |
- name: Checkout pull request branch | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Setup up docker buildx | |
uses: docker/setup-buildx-action@v2 | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: containers | |
create-args: apptainer | |
generate-run-shell: true | |
- name: Get basename | |
id: context_basename | |
run: echo "basename=$(basename ${{ matrix.context }})" >> "$GITHUB_OUTPUT" | |
- name: Build and export docker containers | |
uses: docker/build-push-action@v4 | |
with: | |
context: ${{ matrix.context }} | |
file: .github/docker.df | |
tags: ${{ steps.context_basename.outputs.basename }}_docker:latest | |
outputs: type=docker,dest=/tmp/${{ steps.context_basename.outputs.basename }}_docker.tar | |
- name: Upload docker containers to GitHub Actions | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ steps.context_basename.outputs.basename }}_docker_${{ github.event.pull_request.head.sha }} | |
path: /tmp/${{ steps.context_basename.outputs.basename }}_docker.tar | |
- name: Build apptainer containers | |
shell: micromamba-shell {0} | |
run: | | |
pushd ${{ matrix.context}}; \ | |
apptainer build /tmp/${{ steps.context_basename.outputs.basename }}_apptainer.sif ${{ github.workspace }}/.github/apptainer.def; \ | |
popd | |
- name: Upload apptainer containers to GitHub Actions | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ steps.context_basename.outputs.basename }}_apptainer_${{ github.event.pull_request.head.sha }} | |
path: /tmp/${{ steps.context_basename.outputs.basename }}_apptainer.sif |