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Update containers.csv #149

Update containers.csv

Update containers.csv #149

Workflow file for this run

name: Build containers from conda environments
on:
pull_request:
paths:
- 'container/*/*.yml'
jobs:
setup:
runs-on: ubuntu-latest
strategy:
fail-fast: false
outputs:
matrix: ${{ steps.export-directories.outputs.matrix }}
all_changed_files_count: ${{ steps.changed-directories.outputs.all_changed_files_count }}
steps:
- name: Checkout pull request branch
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Get branch name
id: branch-name
uses: tj-actions/branch-names@v7
- name: Get SHA of last commit to main branch
uses: nrwl/nx-set-shas@v3
id: last_successful_commit_pull_request
with:
main-branch-name: ${{ steps.branch-name.outputs.base_ref_branch }}
- name: Get changed directories
id: changed-directories
uses: tj-actions/changed-files@v36
with:
base_sha: ${{ steps.last_successful_commit_pull_request.outputs.base }}
dir_names: true
dir_names_exclude_current_dir: true
json: true
files: container/*/*.yml
- name: Export changed directories
if: steps.changed-directories.outputs.all_changed_files_count > 0
id: export-directories
run: |
echo "matrix={\"context\":${{ steps.changed-directories.outputs.all_changed_files }}}" > /tmp/changed_directories.json
echo "matrix={\"context\":${{ steps.changed-directories.outputs.all_changed_files }}}" >> "$GITHUB_OUTPUT"
- name: Upload changed directories
if: steps.changed-directories.outputs.all_changed_files_count > 0
uses: actions/upload-artifact@v3
with:
name: changed_directories_${{ github.event.pull_request.head.sha }}
path: /tmp/changed_directories.json
docker_container:
needs: setup
if: needs.setup.outputs.all_changed_files_count > 0
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix: ${{ fromJSON(needs.setup.outputs.matrix) }}
steps:
- name: Checkout pull request branch
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Setup up docker buildx
uses: docker/setup-buildx-action@v2
- name: Get basename
id: context_basename
run: echo "basename=$(basename ${{ matrix.context }})" >> "$GITHUB_OUTPUT"
- name: Build and export docker containers
uses: docker/build-push-action@v4
with:
context: ${{ matrix.context }}
file: .github/docker.df
tags: ${{ steps.context_basename.outputs.basename }}_docker:latest
outputs: type=docker,dest=/tmp/${{ steps.context_basename.outputs.basename }}_docker.tar
# apptainer_container:
# needs: setup
# if: needs.setup.outputs.all_changed_files_count > 0
# runs-on: ubuntu-latest
# strategy:
# fail-fast: false
# matrix: ${{ fromJSON(needs.setup.outputs.matrix) }}
#
# steps:
# - name: Checkout pull request branch
# uses: actions/checkout@v3
# with:
# fetch-depth: 0
#
# - name: Setup micromamba
# uses: mamba-org/setup-micromamba@v1
# with:
# environment-name: containers
# create-args: apptainer
# generate-run-shell: true
#
# - name: Get basename
# id: context_basename
# run: echo "basename=$(basename ${{ matrix.context }})" >> "$GITHUB_OUTPUT"
#
# - name: Build apptainer containers
# shell: micromamba-shell {0}
# run: |
# pushd ${{ matrix.context}}; \
# apptainer build /tmp/${{ steps.context_basename.outputs.basename }}_apptainer.sif ${{ github.workspace }}/.github/apptainer.def; \
# popd