Build conda package #2
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| name: Build conda package | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| version: | |
| description: Version to build package for | |
| required: true | |
| jobs: | |
| build_package_linux: | |
| name: Build conda package for linux-64 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| env: | |
| ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Create recipe from template | |
| run: | | |
| mkdir /tmp/recipe | |
| cp recipe/meta.yaml /tmp/recipe/meta.yaml | |
| cp recipe/build.sh /tmp/recipe/build.sh | |
| version=${{ github.event.inputs.version }} | |
| wget https://github.com/cumc/pecotmr/archive/${version}.tar.gz | |
| sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1) | |
| sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/meta.yaml | |
| sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/meta.yaml | |
| - name: Setup up docker buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Build and export docker containers | |
| uses: docker/build-push-action@v4 | |
| with: | |
| load: true | |
| file: .github/mambaforge_container.df | |
| tags: conda_mambabuild:latest | |
| - name: Build conda packages | |
| run: docker run --rm --volume /tmp:/tmp --volume $(pwd) --workdir $(pwd) conda_mambabuild conda mambabuild --output-folder /tmp/conda-bld /tmp/recipe | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: anaconda-client | |
| create-args: anaconda-client | |
| generate-run-shell: true | |
| - name: Upload packages | |
| shell: micromamba-shell {0} | |
| run: anaconda upload --force /tmp/conda-bld/linux-64/*.tar.bz2 | |
| build_package_macos: | |
| name: Build conda package for osx-64 | |
| runs-on: macos-latest | |
| strategy: | |
| fail-fast: false | |
| env: | |
| ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }} | |
| steps: | |
| - name: Checkout pull request branch | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: boa | |
| create-args: boa conda-verify anaconda-client sed | |
| generate-run-shell: true | |
| - name: Create recipe from template | |
| shell: micromamba-shell {0} | |
| run: | | |
| mkdir /tmp/recipe | |
| cp recipe/meta.yaml /tmp/recipe/meta.yaml | |
| cp recipe/build.sh /tmp/recipe/build.sh | |
| version=${{ github.event.inputs.version }} | |
| wget https://github.com/cumc/pecotmr/archive/${version}.tar.gz | |
| sha256sum=$(sha256sum ${version}.tar.gz | cut -d ' ' -f 1) | |
| sed -i "s/VERSION_PLACEHOLDER/${version}/g" /tmp/recipe/meta.yaml | |
| sed -i "s/SHA256SUM_PLACEHOLDER/${sha256sum}/g" /tmp/recipe/meta.yaml | |
| - name: Set up channels | |
| shell: micromamba-shell {0} | |
| run: | | |
| conda config --file /Users/runner/micromamba-bin/.condarc --append channels bioconda | |
| conda config --file /Users/runner/micromamba-bin/.condarc --append channels nodefaults | |
| xargs -I % conda config --file /Users/runner/micromamba-bin/.condarc --prepend channels % < .custom_channels | |
| conda config --show-sources | |
| - name: Build conda package | |
| shell: micromamba-shell {0} | |
| run: conda mambabuild --output-folder /tmp/conda-bld /tmp/recipe | |
| - name: Upload package | |
| shell: micromamba-shell {0} | |
| run: anaconda upload --force /tmp/conda-bld/osx-64/*.tar.bz2 |