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conda create -n test conda-forge::jax conda-forge::jaxlib skips jax (using libmamba solver only) #221

Closed
2 tasks done
ryan-williams opened this issue Jun 25, 2023 · 3 comments · Fixed by #222
Closed
2 tasks done

conda create -n test conda-forge::jax conda-forge::jaxlib skips jax (using libmamba solver only) #221

ryan-williams opened this issue Jun 25, 2023 · 3 comments · Fixed by #222
Labels
locked [bot] locked due to inactivity type::bug describes erroneous operation, use severity::* to classify the type
Milestone
July 2023 release

Comments

@ryan-williams
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Checklist

  • I added a descriptive title
  • I searched open reports and couldn't find a duplicate

What happened?

Repro: jax package spec is skipped in conda create

docker run --rm --entrypoint bash continuumio/miniconda3 -c '
conda install -n base conda-libmamba-solver && \
conda config --set solver libmamba && \
conda create -n test -d conda-forge::jax conda-forge::jaxlib
'

skips jax, only installs jaxlib:

  added / updated specs:
    - conda-forge::jaxlib
Full output 
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /opt/conda

  added / updated specs:
    - conda-libmamba-solver


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    c-ares-1.19.0              |       h5eee18b_0         118 KB
    ca-certificates-2023.05.30 |       h06a4308_0         120 KB
    certifi-2023.5.7           |  py310h06a4308_0         152 KB
    conda-23.5.0               |  py310h06a4308_0         1.0 MB
    conda-libmamba-solver-23.5.0|  py310h06a4308_0          66 KB
    fmt-9.1.0                  |       hdb19cb5_0         194 KB
    icu-58.2                   |       he6710b0_3        10.5 MB
    krb5-1.20.1                |       h568e23c_1         1.3 MB
    libarchive-3.6.2           |       hb4bd9a0_1         900 KB
    libcurl-8.1.1              |       h91b91d3_1         396 KB
    libedit-3.1.20221030       |       h5eee18b_0         181 KB
    libev-4.33                 |       h7f8727e_1         111 KB
    libmamba-1.4.1             |       hdb19cb5_0         1.7 MB
    libmambapy-1.4.1           |  py310hdb19cb5_0         289 KB
    libnghttp2-1.52.0          |       ha637b67_1         671 KB
    libsolv-0.7.22             |       he621ea3_0         436 KB
    libssh2-1.10.0             |       h37d81fd_2         292 KB
    libxml2-2.10.3             |       hcbfbd50_0         755 KB
    lz4-c-1.9.4                |       h6a678d5_0         154 KB
    openssl-1.1.1u             |       h7f8727e_0         3.7 MB
    pcre2-10.37                |       he7ceb23_1         839 KB
    pybind11-abi-4             |       hd3eb1b0_1          14 KB
    reproc-14.2.4              |       h295c915_1          30 KB
    reproc-cpp-14.2.4          |       h295c915_1          22 KB
    yaml-cpp-0.7.0             |       h295c915_1         543 KB
    zstd-1.5.5                 |       hc292b87_0         647 KB
    ------------------------------------------------------------
                                           Total:        25.0 MB

The following NEW packages will be INSTALLED:

  c-ares             pkgs/main/linux-64::c-ares-1.19.0-h5eee18b_0
  conda-libmamba-so~ pkgs/main/linux-64::conda-libmamba-solver-23.5.0-py310h06a4308_0
  fmt                pkgs/main/linux-64::fmt-9.1.0-hdb19cb5_0
  icu                pkgs/main/linux-64::icu-58.2-he6710b0_3
  krb5               pkgs/main/linux-64::krb5-1.20.1-h568e23c_1
  libarchive         pkgs/main/linux-64::libarchive-3.6.2-hb4bd9a0_1
  libcurl            pkgs/main/linux-64::libcurl-8.1.1-h91b91d3_1
  libedit            pkgs/main/linux-64::libedit-3.1.20221030-h5eee18b_0
  libev              pkgs/main/linux-64::libev-4.33-h7f8727e_1
  libmamba           pkgs/main/linux-64::libmamba-1.4.1-hdb19cb5_0
  libmambapy         pkgs/main/linux-64::libmambapy-1.4.1-py310hdb19cb5_0
  libnghttp2         pkgs/main/linux-64::libnghttp2-1.52.0-ha637b67_1
  libsolv            pkgs/main/linux-64::libsolv-0.7.22-he621ea3_0
  libssh2            pkgs/main/linux-64::libssh2-1.10.0-h37d81fd_2
  libxml2            pkgs/main/linux-64::libxml2-2.10.3-hcbfbd50_0
  lz4-c              pkgs/main/linux-64::lz4-c-1.9.4-h6a678d5_0
  pcre2              pkgs/main/linux-64::pcre2-10.37-he7ceb23_1
  pybind11-abi       pkgs/main/noarch::pybind11-abi-4-hd3eb1b0_1
  reproc             pkgs/main/linux-64::reproc-14.2.4-h295c915_1
  reproc-cpp         pkgs/main/linux-64::reproc-cpp-14.2.4-h295c915_1
  yaml-cpp           pkgs/main/linux-64::yaml-cpp-0.7.0-h295c915_1
  zstd               pkgs/main/linux-64::zstd-1.5.5-hc292b87_0

The following packages will be UPDATED:

  ca-certificates                     2023.01.10-h06a4308_0 --> 2023.05.30-h06a4308_0
  certifi                         2022.12.7-py310h06a4308_0 --> 2023.5.7-py310h06a4308_0
  conda                              23.3.1-py310h06a4308_0 --> 23.5.0-py310h06a4308_0
  openssl                                 1.1.1t-h7f8727e_0 --> 1.1.1u-h7f8727e_0


Proceed ([y]/n)?

Downloading and Extracting Packages

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - defaults
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /opt/conda/envs/test

  added / updated specs:
    - conda-forge::jaxlib


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            2_gnu          23 KB  conda-forge
    appdirs-1.4.4              |     pyhd3eb1b0_0          12 KB
    blas-1.0                   |         openblas          46 KB
    brotlipy-0.7.0             |py311h5eee18b_1002         307 KB
    bzip2-1.0.8                |       h7b6447c_0          78 KB
    certifi-2023.5.7           |  py311h06a4308_0         153 KB
    cffi-1.15.1                |  py311h5eee18b_3         283 KB
    charset-normalizer-2.0.4   |     pyhd3eb1b0_0          35 KB
    cryptography-39.0.1        |  py311h9ce1e76_2         1.5 MB
    idna-3.4                   |  py311h06a4308_0          96 KB
    jaxlib-0.4.12              |cpu_py311h7b5b818_0        43.7 MB  conda-forge
    ld_impl_linux-64-2.38      |       h1181459_1         654 KB
    libabseil-20230125.2       | cxx17_h59595ed_2         1.2 MB  conda-forge
    libffi-3.4.4               |       h6a678d5_0         142 KB
    libgcc-ng-13.1.0           |       he5830b7_0         758 KB  conda-forge
    libgfortran-ng-11.2.0      |       h00389a5_1          20 KB
    libgfortran5-11.2.0        |       h1234567_1         2.0 MB
    libgomp-13.1.0             |       he5830b7_0         409 KB  conda-forge
    libgrpc-1.54.2             |       hb20ce57_2         5.4 MB  conda-forge
    libopenblas-0.3.21         |       h043d6bf_0         5.4 MB
    libprotobuf-3.21.12        |       h3eb15da_0         2.1 MB  conda-forge
    libstdcxx-ng-13.1.0        |       hfd8a6a1_0         3.7 MB  conda-forge
    libuuid-1.41.5             |       h5eee18b_0          27 KB
    libzlib-1.2.13             |       hd590300_5          60 KB  conda-forge
    ml_dtypes-0.2.0            |  py311h320fe9a_1         686 KB  conda-forge
    ncurses-6.4                |       h6a678d5_0         914 KB
    numpy-1.25.0               |  py311h24aa872_0          12 KB
    numpy-base-1.25.0          |  py311hbfb1bba_0         8.1 MB
    openssl-3.1.1              |       hd590300_1         2.5 MB  conda-forge
    packaging-23.0             |  py311h06a4308_0          88 KB
    pip-23.1.2                 |  py311h06a4308_0         3.2 MB
    pooch-1.4.0                |     pyhd3eb1b0_0          41 KB
    pycparser-2.21             |     pyhd3eb1b0_0          94 KB
    pyopenssl-23.0.0           |  py311h06a4308_0         122 KB
    pysocks-1.7.1              |  py311h06a4308_0          35 KB
    python-3.11.3              |       h955ad1f_1        32.6 MB
    python_abi-3.11            |          2_cp311           5 KB  conda-forge
    re2-2023.03.02             |       h8c504da_0         196 KB  conda-forge
    readline-8.2               |       h5eee18b_0         357 KB
    requests-2.29.0            |  py311h06a4308_0         123 KB
    scipy-1.10.1               |  py311h24aa872_1        25.4 MB
    setuptools-67.8.0          |  py311h06a4308_0         1.4 MB
    sqlite-3.41.2              |       h5eee18b_0         1.2 MB
    tk-8.6.12                  |       h1ccaba5_0         3.0 MB
    tzdata-2023c               |       h04d1e81_0         116 KB
    urllib3-1.26.16            |  py311h06a4308_0         256 KB
    wheel-0.38.4               |  py311h06a4308_0          79 KB
    xz-5.4.2                   |       h5eee18b_0         642 KB
    zlib-1.2.13                |       hd590300_5          91 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       149.3 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  appdirs            pkgs/main/noarch::appdirs-1.4.4-pyhd3eb1b0_0
  blas               pkgs/main/linux-64::blas-1.0-openblas
  brotlipy           pkgs/main/linux-64::brotlipy-0.7.0-py311h5eee18b_1002
  bzip2              pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0
  c-ares             pkgs/main/linux-64::c-ares-1.19.0-h5eee18b_0
  ca-certificates    pkgs/main/linux-64::ca-certificates-2023.05.30-h06a4308_0
  certifi            pkgs/main/linux-64::certifi-2023.5.7-py311h06a4308_0
  cffi               pkgs/main/linux-64::cffi-1.15.1-py311h5eee18b_3
  charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
  cryptography       pkgs/main/linux-64::cryptography-39.0.1-py311h9ce1e76_2
  idna               pkgs/main/linux-64::idna-3.4-py311h06a4308_0
  jaxlib             conda-forge/linux-64::jaxlib-0.4.12-cpu_py311h7b5b818_0
  ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1
  libabseil          conda-forge/linux-64::libabseil-20230125.2-cxx17_h59595ed_2
  libffi             pkgs/main/linux-64::libffi-3.4.4-h6a678d5_0
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.1.0-he5830b7_0
  libgfortran-ng     pkgs/main/linux-64::libgfortran-ng-11.2.0-h00389a5_1
  libgfortran5       pkgs/main/linux-64::libgfortran5-11.2.0-h1234567_1
  libgomp            conda-forge/linux-64::libgomp-13.1.0-he5830b7_0
  libgrpc            conda-forge/linux-64::libgrpc-1.54.2-hb20ce57_2
  libopenblas        pkgs/main/linux-64::libopenblas-0.3.21-h043d6bf_0
  libprotobuf        conda-forge/linux-64::libprotobuf-3.21.12-h3eb15da_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.1.0-hfd8a6a1_0
  libuuid            pkgs/main/linux-64::libuuid-1.41.5-h5eee18b_0
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5
  ml_dtypes          conda-forge/linux-64::ml_dtypes-0.2.0-py311h320fe9a_1
  ncurses            pkgs/main/linux-64::ncurses-6.4-h6a678d5_0
  numpy              pkgs/main/linux-64::numpy-1.25.0-py311h24aa872_0
  numpy-base         pkgs/main/linux-64::numpy-base-1.25.0-py311hbfb1bba_0
  openssl            conda-forge/linux-64::openssl-3.1.1-hd590300_1
  packaging          pkgs/main/linux-64::packaging-23.0-py311h06a4308_0
  pip                pkgs/main/linux-64::pip-23.1.2-py311h06a4308_0
  pooch              pkgs/main/noarch::pooch-1.4.0-pyhd3eb1b0_0
  pycparser          pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
  pyopenssl          pkgs/main/linux-64::pyopenssl-23.0.0-py311h06a4308_0
  pysocks            pkgs/main/linux-64::pysocks-1.7.1-py311h06a4308_0
  python             pkgs/main/linux-64::python-3.11.3-h955ad1f_1
  python_abi         conda-forge/linux-64::python_abi-3.11-2_cp311
  re2                conda-forge/linux-64::re2-2023.03.02-h8c504da_0
  readline           pkgs/main/linux-64::readline-8.2-h5eee18b_0
  requests           pkgs/main/linux-64::requests-2.29.0-py311h06a4308_0
  scipy              pkgs/main/linux-64::scipy-1.10.1-py311h24aa872_1
  setuptools         pkgs/main/linux-64::setuptools-67.8.0-py311h06a4308_0
  sqlite             pkgs/main/linux-64::sqlite-3.41.2-h5eee18b_0
  tk                 pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0
  tzdata             pkgs/main/noarch::tzdata-2023c-h04d1e81_0
  urllib3            pkgs/main/linux-64::urllib3-1.26.16-py311h06a4308_0
  wheel              pkgs/main/linux-64::wheel-0.38.4-py311h06a4308_0
  xz                 pkgs/main/linux-64::xz-5.4.2-h5eee18b_0
  zlib               conda-forge/linux-64::zlib-1.2.13-hd590300_5



DryRunExit: Dry run. Exiting.

Reversing the order of specs fixes the issue

Reversing the order of the conda-forge::jax and conda-forge::jaxlib specs makes them both get installed:

docker run --rm --entrypoint bash continuumio/miniconda3 -c '
conda install -n base conda-libmamba-solver && \
conda config --set solver libmamba && \
conda create -n test -d conda-forge::jaxlib conda-forge::jax
'

Both jax and jaxlib are correctly added this time:

  added / updated specs:
    - conda-forge::jax
    - conda-forge::jaxlib
Full output 
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /opt/conda

  added / updated specs:
    - conda-libmamba-solver


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    c-ares-1.19.0              |       h5eee18b_0         118 KB
    ca-certificates-2023.05.30 |       h06a4308_0         120 KB
    certifi-2023.5.7           |  py310h06a4308_0         152 KB
    conda-23.5.0               |  py310h06a4308_0         1.0 MB
    conda-libmamba-solver-23.5.0|  py310h06a4308_0          66 KB
    fmt-9.1.0                  |       hdb19cb5_0         194 KB
    icu-58.2                   |       he6710b0_3        10.5 MB
    krb5-1.20.1                |       h568e23c_1         1.3 MB
    libarchive-3.6.2           |       hb4bd9a0_1         900 KB
    libcurl-8.1.1              |       h91b91d3_1         396 KB
    libedit-3.1.20221030       |       h5eee18b_0         181 KB
    libev-4.33                 |       h7f8727e_1         111 KB
    libmamba-1.4.1             |       hdb19cb5_0         1.7 MB
    libmambapy-1.4.1           |  py310hdb19cb5_0         289 KB
    libnghttp2-1.52.0          |       ha637b67_1         671 KB
    libsolv-0.7.22             |       he621ea3_0         436 KB
    libssh2-1.10.0             |       h37d81fd_2         292 KB
    libxml2-2.10.3             |       hcbfbd50_0         755 KB
    lz4-c-1.9.4                |       h6a678d5_0         154 KB
    openssl-1.1.1u             |       h7f8727e_0         3.7 MB
    pcre2-10.37                |       he7ceb23_1         839 KB
    pybind11-abi-4             |       hd3eb1b0_1          14 KB
    reproc-14.2.4              |       h295c915_1          30 KB
    reproc-cpp-14.2.4          |       h295c915_1          22 KB
    yaml-cpp-0.7.0             |       h295c915_1         543 KB
    zstd-1.5.5                 |       hc292b87_0         647 KB
    ------------------------------------------------------------
                                           Total:        25.0 MB

The following NEW packages will be INSTALLED:

  c-ares             pkgs/main/linux-64::c-ares-1.19.0-h5eee18b_0
  conda-libmamba-so~ pkgs/main/linux-64::conda-libmamba-solver-23.5.0-py310h06a4308_0
  fmt                pkgs/main/linux-64::fmt-9.1.0-hdb19cb5_0
  icu                pkgs/main/linux-64::icu-58.2-he6710b0_3
  krb5               pkgs/main/linux-64::krb5-1.20.1-h568e23c_1
  libarchive         pkgs/main/linux-64::libarchive-3.6.2-hb4bd9a0_1
  libcurl            pkgs/main/linux-64::libcurl-8.1.1-h91b91d3_1
  libedit            pkgs/main/linux-64::libedit-3.1.20221030-h5eee18b_0
  libev              pkgs/main/linux-64::libev-4.33-h7f8727e_1
  libmamba           pkgs/main/linux-64::libmamba-1.4.1-hdb19cb5_0
  libmambapy         pkgs/main/linux-64::libmambapy-1.4.1-py310hdb19cb5_0
  libnghttp2         pkgs/main/linux-64::libnghttp2-1.52.0-ha637b67_1
  libsolv            pkgs/main/linux-64::libsolv-0.7.22-he621ea3_0
  libssh2            pkgs/main/linux-64::libssh2-1.10.0-h37d81fd_2
  libxml2            pkgs/main/linux-64::libxml2-2.10.3-hcbfbd50_0
  lz4-c              pkgs/main/linux-64::lz4-c-1.9.4-h6a678d5_0
  pcre2              pkgs/main/linux-64::pcre2-10.37-he7ceb23_1
  pybind11-abi       pkgs/main/noarch::pybind11-abi-4-hd3eb1b0_1
  reproc             pkgs/main/linux-64::reproc-14.2.4-h295c915_1
  reproc-cpp         pkgs/main/linux-64::reproc-cpp-14.2.4-h295c915_1
  yaml-cpp           pkgs/main/linux-64::yaml-cpp-0.7.0-h295c915_1
  zstd               pkgs/main/linux-64::zstd-1.5.5-hc292b87_0

The following packages will be UPDATED:

  ca-certificates                     2023.01.10-h06a4308_0 --> 2023.05.30-h06a4308_0
  certifi                         2022.12.7-py310h06a4308_0 --> 2023.5.7-py310h06a4308_0
  conda                              23.3.1-py310h06a4308_0 --> 23.5.0-py310h06a4308_0
  openssl                                 1.1.1t-h7f8727e_0 --> 1.1.1u-h7f8727e_0


Proceed ([y]/n)?

Downloading and Extracting Packages

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - defaults
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /opt/conda/envs/test

  added / updated specs:
    - conda-forge::jax
    - conda-forge::jaxlib


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            2_gnu          23 KB  conda-forge
    appdirs-1.4.4              |     pyhd3eb1b0_0          12 KB
    blas-1.0                   |         openblas          46 KB
    brotlipy-0.7.0             |py311h5eee18b_1002         307 KB
    bzip2-1.0.8                |       h7b6447c_0          78 KB
    certifi-2023.5.7           |  py311h06a4308_0         153 KB
    cffi-1.15.1                |  py311h5eee18b_3         283 KB
    charset-normalizer-2.0.4   |     pyhd3eb1b0_0          35 KB
    cryptography-39.0.1        |  py311h9ce1e76_2         1.5 MB
    idna-3.4                   |  py311h06a4308_0          96 KB
    importlib-metadata-6.0.0   |  py311h06a4308_0          46 KB
    importlib_metadata-6.0.0   |       hd3eb1b0_0           8 KB
    jax-0.4.12                 |     pyhd8ed1ab_0         977 KB  conda-forge
    jaxlib-0.4.12              |cpu_py311h7b5b818_0        43.7 MB  conda-forge
    ld_impl_linux-64-2.38      |       h1181459_1         654 KB
    libabseil-20230125.2       | cxx17_h59595ed_2         1.2 MB  conda-forge
    libffi-3.4.4               |       h6a678d5_0         142 KB
    libgcc-ng-13.1.0           |       he5830b7_0         758 KB  conda-forge
    libgfortran-ng-11.2.0      |       h00389a5_1          20 KB
    libgfortran5-11.2.0        |       h1234567_1         2.0 MB
    libgomp-13.1.0             |       he5830b7_0         409 KB  conda-forge
    libgrpc-1.54.2             |       hb20ce57_2         5.4 MB  conda-forge
    libopenblas-0.3.21         |       h043d6bf_0         5.4 MB
    libprotobuf-3.21.12        |       h3eb15da_0         2.1 MB  conda-forge
    libstdcxx-ng-13.1.0        |       hfd8a6a1_0         3.7 MB  conda-forge
    libuuid-1.41.5             |       h5eee18b_0          27 KB
    libzlib-1.2.13             |       hd590300_5          60 KB  conda-forge
    ml_dtypes-0.2.0            |  py311h320fe9a_1         686 KB  conda-forge
    ncurses-6.4                |       h6a678d5_0         914 KB
    numpy-1.25.0               |  py311h24aa872_0          12 KB
    numpy-base-1.25.0          |  py311hbfb1bba_0         8.1 MB
    openssl-3.1.1              |       hd590300_1         2.5 MB  conda-forge
    opt_einsum-3.3.0           |     pyhd3eb1b0_1          57 KB
    packaging-23.0             |  py311h06a4308_0          88 KB
    pip-23.1.2                 |  py311h06a4308_0         3.2 MB
    pooch-1.4.0                |     pyhd3eb1b0_0          41 KB
    pycparser-2.21             |     pyhd3eb1b0_0          94 KB
    pyopenssl-23.0.0           |  py311h06a4308_0         122 KB
    pysocks-1.7.1              |  py311h06a4308_0          35 KB
    python-3.11.3              |       h955ad1f_1        32.6 MB
    python_abi-3.11            |          2_cp311           5 KB  conda-forge
    re2-2023.03.02             |       h8c504da_0         196 KB  conda-forge
    readline-8.2               |       h5eee18b_0         357 KB
    requests-2.29.0            |  py311h06a4308_0         123 KB
    scipy-1.10.1               |  py311h24aa872_1        25.4 MB
    setuptools-67.8.0          |  py311h06a4308_0         1.4 MB
    sqlite-3.41.2              |       h5eee18b_0         1.2 MB
    tk-8.6.12                  |       h1ccaba5_0         3.0 MB
    tzdata-2023c               |       h04d1e81_0         116 KB
    urllib3-1.26.16            |  py311h06a4308_0         256 KB
    wheel-0.38.4               |  py311h06a4308_0          79 KB
    xz-5.4.2                   |       h5eee18b_0         642 KB
    zipp-3.11.0                |  py311h06a4308_0          21 KB
    zlib-1.2.13                |       hd590300_5          91 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       150.4 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
  appdirs            pkgs/main/noarch::appdirs-1.4.4-pyhd3eb1b0_0
  blas               pkgs/main/linux-64::blas-1.0-openblas
  brotlipy           pkgs/main/linux-64::brotlipy-0.7.0-py311h5eee18b_1002
  bzip2              pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0
  c-ares             pkgs/main/linux-64::c-ares-1.19.0-h5eee18b_0
  ca-certificates    pkgs/main/linux-64::ca-certificates-2023.05.30-h06a4308_0
  certifi            pkgs/main/linux-64::certifi-2023.5.7-py311h06a4308_0
  cffi               pkgs/main/linux-64::cffi-1.15.1-py311h5eee18b_3
  charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
  cryptography       pkgs/main/linux-64::cryptography-39.0.1-py311h9ce1e76_2
  idna               pkgs/main/linux-64::idna-3.4-py311h06a4308_0
  importlib-metadata pkgs/main/linux-64::importlib-metadata-6.0.0-py311h06a4308_0
  importlib_metadata pkgs/main/noarch::importlib_metadata-6.0.0-hd3eb1b0_0
  jax                conda-forge/noarch::jax-0.4.12-pyhd8ed1ab_0
  jaxlib             conda-forge/linux-64::jaxlib-0.4.12-cpu_py311h7b5b818_0
  ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1
  libabseil          conda-forge/linux-64::libabseil-20230125.2-cxx17_h59595ed_2
  libffi             pkgs/main/linux-64::libffi-3.4.4-h6a678d5_0
  libgcc-ng          conda-forge/linux-64::libgcc-ng-13.1.0-he5830b7_0
  libgfortran-ng     pkgs/main/linux-64::libgfortran-ng-11.2.0-h00389a5_1
  libgfortran5       pkgs/main/linux-64::libgfortran5-11.2.0-h1234567_1
  libgomp            conda-forge/linux-64::libgomp-13.1.0-he5830b7_0
  libgrpc            conda-forge/linux-64::libgrpc-1.54.2-hb20ce57_2
  libopenblas        pkgs/main/linux-64::libopenblas-0.3.21-h043d6bf_0
  libprotobuf        conda-forge/linux-64::libprotobuf-3.21.12-h3eb15da_0
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-13.1.0-hfd8a6a1_0
  libuuid            pkgs/main/linux-64::libuuid-1.41.5-h5eee18b_0
  libzlib            conda-forge/linux-64::libzlib-1.2.13-hd590300_5
  ml_dtypes          conda-forge/linux-64::ml_dtypes-0.2.0-py311h320fe9a_1
  ncurses            pkgs/main/linux-64::ncurses-6.4-h6a678d5_0
  numpy              pkgs/main/linux-64::numpy-1.25.0-py311h24aa872_0
  numpy-base         pkgs/main/linux-64::numpy-base-1.25.0-py311hbfb1bba_0
  openssl            conda-forge/linux-64::openssl-3.1.1-hd590300_1
  opt_einsum         pkgs/main/noarch::opt_einsum-3.3.0-pyhd3eb1b0_1
  packaging          pkgs/main/linux-64::packaging-23.0-py311h06a4308_0
  pip                pkgs/main/linux-64::pip-23.1.2-py311h06a4308_0
  pooch              pkgs/main/noarch::pooch-1.4.0-pyhd3eb1b0_0
  pycparser          pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
  pyopenssl          pkgs/main/linux-64::pyopenssl-23.0.0-py311h06a4308_0
  pysocks            pkgs/main/linux-64::pysocks-1.7.1-py311h06a4308_0
  python             pkgs/main/linux-64::python-3.11.3-h955ad1f_1
  python_abi         conda-forge/linux-64::python_abi-3.11-2_cp311
  re2                conda-forge/linux-64::re2-2023.03.02-h8c504da_0
  readline           pkgs/main/linux-64::readline-8.2-h5eee18b_0
  requests           pkgs/main/linux-64::requests-2.29.0-py311h06a4308_0
  scipy              pkgs/main/linux-64::scipy-1.10.1-py311h24aa872_1
  setuptools         pkgs/main/linux-64::setuptools-67.8.0-py311h06a4308_0
  sqlite             pkgs/main/linux-64::sqlite-3.41.2-h5eee18b_0
  tk                 pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0
  tzdata             pkgs/main/noarch::tzdata-2023c-h04d1e81_0
  urllib3            pkgs/main/linux-64::urllib3-1.26.16-py311h06a4308_0
  wheel              pkgs/main/linux-64::wheel-0.38.4-py311h06a4308_0
  xz                 pkgs/main/linux-64::xz-5.4.2-h5eee18b_0
  zipp               pkgs/main/linux-64::zipp-3.11.0-py311h06a4308_0
  zlib               conda-forge/linux-64::zlib-1.2.13-hd590300_5


DryRunExit: Dry run. Exiting.

Other conda create invocations don't exhibit the issue

I tried similar, and didn't see the issue with:

  • -c conda-forge jax jaxlib (instead of conda-forge::jax conda-forge::jaxlib)
  • the default solver (without libmamba-solver)
  • micromamba

Conda Info

active environment : None
       user config file : /root/.condarc
 populated config files : /root/.condarc
          conda version : 23.5.0
    conda-build version : not installed
         python version : 3.10.10.final.0
       virtual packages : __archspec=1=x86_64
                          __glibc=2.31=0
                          __linux=5.10.179=0
                          __unix=0=0
       base environment : /opt/conda  (writable)
      conda av data dir : /opt/conda/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /opt/conda/pkgs
                          /root/.conda/pkgs
       envs directories : /opt/conda/envs
                          /root/.conda/envs
               platform : linux-64
             user-agent : conda/23.5.0 requests/2.28.1 CPython/3.10.10 Linux/5.10.179-166.674.amzn2.x86_64 debian/11 glibc/2.31 solver/libmamba conda-libmamba-solver/23.5.0 libmambapy/1.4.1
                UID:GID : 0:0
             netrc file : None
           offline mode : False

Conda Config

==> /root/.condarc <==
solver: libmamba

Conda list

# packages in environment at /opt/conda:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main    defaults
_openmp_mutex             5.1                       1_gnu    defaults
boltons                   23.0.0          py310h06a4308_0    defaults
brotlipy                  0.7.0           py310h7f8727e_1002    defaults
bzip2                     1.0.8                h7b6447c_0    defaults
c-ares                    1.19.0               h5eee18b_0    defaults
ca-certificates           2023.05.30           h06a4308_0    defaults
certifi                   2023.5.7        py310h06a4308_0    defaults
cffi                      1.15.1          py310h5eee18b_3    defaults
charset-normalizer        2.0.4              pyhd3eb1b0_0    defaults
conda                     23.5.0          py310h06a4308_0    defaults
conda-content-trust       0.1.3           py310h06a4308_0    defaults
conda-libmamba-solver     23.5.0          py310h06a4308_0    defaults
conda-package-handling    2.0.2           py310h06a4308_0    defaults
conda-package-streaming   0.7.0           py310h06a4308_0    defaults
cryptography              39.0.1          py310h9ce1e76_0    defaults
fmt                       9.1.0                hdb19cb5_0    defaults
icu                       58.2                 he6710b0_3    defaults
idna                      3.4             py310h06a4308_0    defaults
jsonpatch                 1.32               pyhd3eb1b0_0    defaults
jsonpointer               2.1                pyhd3eb1b0_0    defaults
krb5                      1.20.1               h568e23c_1    defaults
ld_impl_linux-64          2.38                 h1181459_1    defaults
libarchive                3.6.2                hb4bd9a0_1    defaults
libcurl                   8.1.1                h91b91d3_1    defaults
libedit                   3.1.20221030         h5eee18b_0    defaults
libev                     4.33                 h7f8727e_1    defaults
libffi                    3.4.2                h6a678d5_6    defaults
libgcc-ng                 11.2.0               h1234567_1    defaults
libgomp                   11.2.0               h1234567_1    defaults
libmamba                  1.4.1                hdb19cb5_0    defaults
libmambapy                1.4.1           py310hdb19cb5_0    defaults
libnghttp2                1.52.0               ha637b67_1    defaults
libsolv                   0.7.22               he621ea3_0    defaults
libssh2                   1.10.0               h37d81fd_2    defaults
libstdcxx-ng              11.2.0               h1234567_1    defaults
libuuid                   1.41.5               h5eee18b_0    defaults
libxml2                   2.10.3               hcbfbd50_0    defaults
lz4-c                     1.9.4                h6a678d5_0    defaults
ncurses                   6.4                  h6a678d5_0    defaults
openssl                   1.1.1u               h7f8727e_0    defaults
packaging                 23.0            py310h06a4308_0    defaults
pcre2                     10.37                he7ceb23_1    defaults
pip                       23.0.1          py310h06a4308_0    defaults
pluggy                    1.0.0           py310h06a4308_1    defaults
pybind11-abi              4                    hd3eb1b0_1    defaults
pycosat                   0.6.4           py310h5eee18b_0    defaults
pycparser                 2.21               pyhd3eb1b0_0    defaults
pyopenssl                 23.0.0          py310h06a4308_0    defaults
pysocks                   1.7.1           py310h06a4308_0    defaults
python                    3.10.10              h7a1cb2a_2    defaults
readline                  8.2                  h5eee18b_0    defaults
reproc                    14.2.4               h295c915_1    defaults
reproc-cpp                14.2.4               h295c915_1    defaults
requests                  2.28.1          py310h06a4308_1    defaults
ruamel.yaml               0.17.21         py310h5eee18b_0    defaults
ruamel.yaml.clib          0.2.6           py310h5eee18b_1    defaults
setuptools                65.6.3          py310h06a4308_0    defaults
six                       1.16.0             pyhd3eb1b0_1    defaults
sqlite                    3.41.1               h5eee18b_0    defaults
tk                        8.6.12               h1ccaba5_0    defaults
toolz                     0.12.0          py310h06a4308_0    defaults
tqdm                      4.65.0          py310h2f386ee_0    defaults
tzdata                    2023c                h04d1e81_0    defaults
urllib3                   1.26.15         py310h06a4308_0    defaults
wheel                     0.38.4          py310h06a4308_0    defaults
xz                        5.2.10               h5eee18b_1    defaults
yaml-cpp                  0.7.0                h295c915_1    defaults
zlib                      1.2.13               h5eee18b_0    defaults
zstandard                 0.19.0          py310h5eee18b_0    defaults
zstd                      1.5.5                hc292b87_0    defaults

Additional Context

No response
@ryan-williams ryan-williams added the type::bug describes erroneous operation, use severity::* to classify the type label Jun 25, 2023
@github-project-automation github-project-automation bot moved this to 🆕 New in 🧭 Planning Jun 25, 2023
@ryan-williams
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Seems like an instance of #198, since the issue only occurs with libmamba solver (not with the default solver, or mamba CLI)

@jaimergp
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Thanks for the report! I can reproduce locally. It looks like the matchspec is not even reaching the solver (which is good news, because that'd be trickier to inspect, debug and fix):

DEBUG conda.gateways.logging:set_verbosity(217): verbosity set to 3
DEBUG conda.conda_libmamba_solver.solver:__init__(100): Ignoring repodata_fn='current_repodata.json', defaulting to repodata.json
INFO conda.conda_libmamba_solver.solver:_log_info(285): Using libmamba solver
INFO conda.conda_libmamba_solver.solver:_log_info(286): Conda version: 23.5.0
INFO conda.conda_libmamba_solver.solver:_log_info(287): Mamba version: 1.4.1
INFO conda.conda_libmamba_solver.solver:_log_info(288): Target prefix: '/Users/jrodriguez/.local/anaconda/envs/unused'
INFO conda.conda_libmamba_solver.solver:_log_info(289): Command: ['/Users/jrodriguez/.local/anaconda/bin/conda', 'create', '-n', 'unused', '-d', 'conda-forge::jax', 'conda-forge::jaxlib', '--dry-run', '-vvv']
INFO conda.conda_libmamba_solver.solver:_log_info(290): Specs to add: IndexedSet([MatchSpec("conda-forge::jaxlib")])
INFO conda.conda_libmamba_solver.solver:_log_info(291): Specs to remove: frozenset()

See how jax is not mentioned in specs_to_add! Very intriguing.

@jaimergp jaimergp mentioned this issue Jun 26, 2023
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@costrouc
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costrouc commented Jul 1, 2023

I was able to reproduce this locally as well. @jaimergp I am looking in the PR #222 that you opened.

@github-project-automation github-project-automation bot moved this from 🆕 New to 🏁 Done in 🧭 Planning Jul 17, 2023
@jaimergp jaimergp added this to the July 2023 release milestone Jul 18, 2023
@github-actions github-actions bot added the locked [bot] locked due to inactivity label Jul 18, 2024
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Fix disappearing channel matchspecs conda/conda-libmamba-solver
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@ryan-williams @costrouc @jaimergp