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Fix excessive memory use in inspect_linkages_lief #3724

Fix excessive memory use in inspect_linkages_lief

Fix excessive memory use in inspect_linkages_lief #3724

Workflow file for this run

name: Tests
on:
# https://docs.github.com/en/webhooks-and-events/webhooks/webhook-events-and-payloads#push
push:
branches:
- main
- feature/**
- '[0-9].*.x' # e.g., 3.24.x
- '[0-9][0-9].*.x' # e.g., 23.3.x
# https://docs.github.com/en/webhooks-and-events/webhooks/webhook-events-and-payloads#pull_request
pull_request:
# https://docs.github.com/en/webhooks-and-events/webhooks/webhook-events-and-payloads#workflow_dispatch
workflow_dispatch:
# no payload
schedule:
# https://crontab.guru/#37_18_*_*_*
- cron: 37 18 * * *
concurrency:
# Concurrency group that uses the workflow name and PR number if available
# or commit SHA as a fallback. If a new build is triggered under that
# concurrency group while a previous build is running it will be canceled.
# Repeated pushes to a PR will cancel all previous builds, while multiple
# merges to main will not cancel.
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.sha }}
cancel-in-progress: true
env:
# https://conda.github.io/conda-libmamba-solver/user-guide/configuration/#advanced-options
CONDA_LIBMAMBA_SOLVER_NO_CHANNELS_FROM_INSTALLED: true
jobs:
# detect whether any code changes are included in this PR
changes:
runs-on: ubuntu-latest
permissions:
# necessary to detect changes
# https://github.com/dorny/paths-filter#supported-workflows
pull-requests: read
outputs:
code: ${{ steps.filter.outputs.code }}
steps:
- name: Checkout Source
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
# dorny/paths-filter needs git clone for non-PR events
# https://github.com/dorny/paths-filter#supported-workflows
if: github.event_name != 'pull_request'
- name: Filter Changes
uses: dorny/paths-filter@de90cc6fb38fc0963ad72b210f1f284cd68cea36
id: filter
with:
filters: |
code:
- 'conda_build/**'
- 'tests/**'
- '*.py'
- 'recipe/**'
- '.github/workflows/tests.yml'
# linux test suite
linux:
# only run test suite if there are code changes
needs: changes
if: github.event_name == 'schedule' || needs.changes.outputs.code == 'true'
runs-on: ubuntu-latest
defaults:
run:
# https://github.com/conda-incubator/setup-miniconda#use-a-default-shell
shell: bash -el {0}
strategy:
fail-fast: false
matrix:
# test all lower versions (w/ stable conda) and upper version (w/ canary conda)
python-version: ['3.9', '3.10', '3.11']
conda-version: [release]
test-type: [serial, parallel]
include:
# minimum Python/conda combo
- python-version: '3.8'
conda-version: 23.7.0
test-type: serial
- python-version: '3.8'
conda-version: 23.7.0
test-type: parallel
# maximum Python/conda combo
- python-version: '3.12'
conda-version: canary
test-type: serial
- python-version: '3.12'
conda-version: canary
test-type: parallel
env:
CONDA_CHANNEL_LABEL: ${{ matrix.conda-version == 'canary' && 'conda-canary/label/dev::' || '' }}
CONDA_VERSION: ${{ contains('canary|release', matrix.conda-version) && 'conda' || format('conda={0}', matrix.conda-version) }}
PYTEST_MARKER: ${{ matrix.test-type == 'serial' && 'serial' || 'not serial' }}
steps:
- name: Checkout Source
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- name: Hash + Timestamp
run: echo "HASH=${{ runner.os }}-${{ runner.arch }}-Py${{ matrix.python-version }}-${{ matrix.conda-version }}-${{ matrix.test-type }}-$(date -u "+%Y%m")" >> $GITHUB_ENV
- name: Cache Conda
uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9
with:
path: ~/conda_pkgs_dir
key: cache-${{ env.HASH }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca
with:
condarc-file: .github/condarc
run-post: false # skip post cleanup
- name: Conda Install
run: >
conda install
--yes
--file tests/requirements.txt
--file tests/requirements-${{ runner.os }}.txt
--file tests/requirements-ci.txt
python=${{ matrix.python-version }}
${{ env.CONDA_CHANNEL_LABEL }}${{ env.CONDA_VERSION }}
# TODO: how can we remove this step?
- name: Install Self
run: pip install -e .
- name: Conda Info
# view test env info (not base)
run: python -m conda info --verbose
- name: Conda List
run: conda list --show-channel-urls
- name: Run Tests
run: >
pytest
--cov=conda_build
-n auto
-m "${{ env.PYTEST_MARKER }}"
- name: Upload Coverage
uses: codecov/codecov-action@84508663e988701840491b86de86b666e8a86bed
with:
flags: ${{ runner.os }},${{ runner.arch }},${{ matrix.python-version }},${{ matrix.test-type }}
- name: Upload Test Results
if: '!cancelled()'
uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808
with:
name: test-results-${{ env.HASH }}
path: |
.coverage
test-report.xml
retention-days: 1 # temporary, combined in aggregate below
# linux benchmarks
linux-benchmarks:
# only run test suite if there are code changes
needs: changes
if: needs.changes.outputs.code == 'true'
runs-on: ubuntu-latest
defaults:
run:
# https://github.com/conda-incubator/setup-miniconda#use-a-default-shell
shell: bash -el {0} # bash exit immediately on error + login shell
strategy:
fail-fast: false
matrix:
python-version: ['3.12']
steps:
- name: Checkout Source
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- name: Hash + Timestamp
run: echo "HASH=${{ runner.os }}-${{ runner.arch }}-Py${{ matrix.python-version }}-benchmark-$(date -u "+%Y%m")" >> $GITHUB_ENV
- name: Cache Conda
uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9
with:
path: ~/conda_pkgs_dir
key: cache-${{ env.HASH }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca
with:
condarc-file: .github/condarc
run-post: false # skip post cleanup
- name: Conda Install
run: >
conda install
--yes
--file tests/requirements.txt
--file tests/requirements-${{ runner.os }}.txt
--file tests/requirements-ci.txt
python=${{ matrix.python-version }}
${{ env.CONDA_CHANNEL_LABEL }}${{ env.CONDA_VERSION }}
- name: Install CodSpeed
run: pip install git+https://github.com/kenodegard/pytest-codspeed.git@fix-outerr-redirects#egg=pytest-codspeed
# TODO: how can we remove this step?
- name: Install Self
run: pip install -e .
- name: Conda Info
# view test env info (not base)
run: python -m conda info --verbose
- name: Conda Config
run: conda config --show-sources
- name: Conda List
run: conda list --show-channel-urls
- name: Run Benchmarks
uses: CodSpeedHQ/action@0b631f8998f2389eb5144632b6f9f8fabd33a86e
with:
token: ${{ secrets.CODSPEED_TOKEN }}
run: $CONDA/envs/test/bin/pytest --codspeed
# windows test suite
windows:
# only run test suite if there are code changes
needs: changes
if: github.event_name == 'schedule' || needs.changes.outputs.code == 'true'
runs-on: windows-2019
strategy:
fail-fast: false
matrix:
# test lower version (w/ stable conda) and upper version (w/ canary conda)
python-version: ['3.8']
conda-version: [release]
test-type: [serial, parallel]
include:
- python-version: '3.12'
conda-version: canary
test-type: serial
- python-version: '3.12'
conda-version: canary
test-type: parallel
env:
ErrorActionPreference: Stop # powershell exit on first error
CONDA_CHANNEL_LABEL: ${{ matrix.conda-version == 'canary' && 'conda-canary/label/dev' || 'defaults' }}
PYTEST_MARKER: ${{ matrix.test-type == 'serial' && 'serial' || 'not serial and not slow' }}
steps:
- name: Checkout Source
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- name: Hash + Timestamp
shell: bash # use bash to run date command
run: echo "HASH=${{ runner.os }}-${{ runner.arch }}-Py${{ matrix.python-version }}-${{ matrix.conda-version }}-${{ matrix.test-type }}-$(date -u "+%Y%m")" >> $GITHUB_ENV
- name: Cache Conda
uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9
with:
path: ~/conda_pkgs_dir
key: cache-${{ env.HASH }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca
with:
condarc-file: .github\condarc
run-post: false # skip post cleanup
- name: Choco Install
run: choco install visualstudio2017-workload-vctools
- name: Conda Install
run: >
conda install
--yes
--file tests\requirements.txt
--file tests\requirements-${{ runner.os }}.txt
--file tests\requirements-ci.txt
python=${{ matrix.python-version }}
${{ env.CONDA_CHANNEL_LABEL }}::conda
# TODO: how can we remove this step?
- name: Install Self
run: pip install -e .
- name: Conda Info
# view test env info (not base)
run: python -m conda info --verbose
- name: Conda List
run: conda list --show-channel-urls
- name: Run Tests
# Windows is sensitive to long paths, using `--basetemp=${{ runner.temp }} to
# keep the test directories shorter
run: >
pytest
--cov=conda_build
--basetemp=${{ runner.temp }}
-n auto
-m "${{ env.PYTEST_MARKER }}"
- name: Upload Coverage
uses: codecov/codecov-action@84508663e988701840491b86de86b666e8a86bed
with:
flags: ${{ runner.os }},${{ runner.arch }},${{ matrix.python-version }},${{ matrix.test-type }}
- name: Upload Test Results
if: '!cancelled()'
uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808
with:
name: test-results-${{ env.HASH }}
path: |
.coverage
test-report.xml
retention-days: 1 # temporary, combined in aggregate below
# macos test suite
macos:
# only run test suite if there are code changes
needs: changes
if: github.event_name == 'schedule' || needs.changes.outputs.code == 'true'
# Old macOS needed for old SDK (see xcode step below)
# This is needed for some MACOSX_DEPLOYMENT_TARGET tests
# We could also install SDKs from a external provider in the future
# if we want to update this runner to a non-deprecated version
runs-on: macos-11
defaults:
run:
# https://github.com/conda-incubator/setup-miniconda#use-a-default-shell
shell: bash -el {0}
strategy:
fail-fast: false
matrix:
# test lower version (w/ stable conda) and upper version (w/ canary conda)
python-version: ['3.8']
conda-version: [release]
test-type: [serial, parallel]
include:
- python-version: '3.12'
conda-version: canary
test-type: serial
- python-version: '3.12'
conda-version: canary
test-type: parallel
env:
CONDA_CHANNEL_LABEL: ${{ matrix.conda-version == 'canary' && 'conda-canary/label/dev' || 'defaults' }}
PYTEST_MARKER: ${{ matrix.test-type == 'serial' && 'serial' || 'not serial' }}
steps:
- name: Checkout Source
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
fetch-depth: 0
- name: Hash + Timestamp
run: echo "HASH=${{ runner.os }}-${{ runner.arch }}-Py${{ matrix.python-version }}-${{ matrix.conda-version }}-${{ matrix.test-type }}-$(date -u "+%Y%m")" >> $GITHUB_ENV
- name: Cache Conda
uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9
with:
path: ~/conda_pkgs_dir
key: cache-${{ env.HASH }}
- name: Setup Miniconda
uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca
with:
condarc-file: .github/condarc
run-post: false # skip post cleanup
- name: Xcode Install
run: sudo xcode-select --switch /Applications/Xcode_11.7.app
- name: Conda Install
run: >
conda install
--yes
--file tests/requirements.txt
--file tests/requirements-${{ runner.os }}.txt
--file tests/requirements-ci.txt
python=${{ matrix.python-version }}
${{ env.CONDA_CHANNEL_LABEL }}::conda
# TODO: how can we remove this step?
- name: Install Self
run: pip install -e .
- name: Conda Info
# view test env info (not base)
run: python -m conda info --verbose
- name: Conda List
run: conda list --show-channel-urls
- name: Run Tests
run: >
pytest
--cov=conda_build
-n auto
-m "${{ env.PYTEST_MARKER }}"
- name: Upload Coverage
uses: codecov/codecov-action@84508663e988701840491b86de86b666e8a86bed
with:
flags: ${{ runner.os }},${{ runner.arch }},${{ matrix.python-version }},${{ matrix.test-type }}
- name: Upload Test Results
if: '!cancelled()'
uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808
with:
name: test-results-${{ env.HASH }}
path: |
.coverage
test-report.xml
retention-days: 1 # temporary, combined in aggregate below
# aggregate and upload
aggregate:
# only aggregate test suite if there are code changes
needs: [changes, linux, linux-benchmarks, windows, macos]
if: >-
!cancelled()
&& (
github.event_name == 'schedule'
|| needs.changes.outputs.code == 'true'
)
runs-on: ubuntu-latest
steps:
- name: Download Artifacts
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e
- name: Upload Combined Test Results
# provides one downloadable archive of all matrix run test results for further analysis
uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808
with:
name: test-results-${{ github.sha }}-all
path: test-results-*
- name: Test Summary
uses: test-summary/action@032c8a9cec6aaa3c20228112cae6ca10a3b29336
with:
paths: test-results-*/test-report.xml
# required check
analyze:
needs: [linux, linux-benchmarks, windows, macos, aggregate]
if: '!cancelled()'
runs-on: ubuntu-latest
steps:
- name: Determine Success
uses: re-actors/alls-green@05ac9388f0aebcb5727afa17fcccfecd6f8ec5fe
with:
# permit jobs to be skipped if there are no code changes (see changes job)
allowed-skips: ${{ toJSON(needs) }}
jobs: ${{ toJSON(needs) }}
# canary builds
build:
needs: [analyze]
# only build canary build if
# - prior steps succeeded,
# - this is the main repo, and
# - we are on the main, feature, or release branch
if: >-
!cancelled()
&& !github.event.repository.fork
&& (
github.ref_name == 'main'
|| startsWith(github.ref_name, 'feature/')
|| endsWith(github.ref_name, '.x')
)
strategy:
matrix:
include:
- runner: ubuntu-latest
subdir: linux-64
- runner: macos-13
subdir: osx-64
- runner: macos-14 # FUTURE: Use -latest
subdir: osx-arm64
- runner: windows-latest
subdir: win-64
runs-on: ${{ matrix.runner }}
steps:
# Clean checkout of specific git ref needed for package metadata version
# which needs env vars GIT_DESCRIBE_TAG and GIT_BUILD_STR:
- name: Checkout Source
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
with:
ref: ${{ github.ref }}
clean: true
fetch-depth: 0
# Explicitly use Python 3.12 since each of the OSes has a different default Python
- name: Setup Python
uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
with:
python-version: '3.12'
- name: Detect Label
shell: python
run: |
from pathlib import Path
from re import match
from os import environ
if "${{ github.ref_name }}" == "main":
# main branch commits are uploaded to the dev label
label = "dev"
elif "${{ github.ref_name }}".startswith("feature/"):
# feature branch commits are uploaded to a custom label
label = "${{ github.ref_name }}"
else:
# release branch commits are added to the rc label
# see https://github.com/conda/infrastructure/issues/760
_, name = "${{ github.repository }}".split("/")
label = f"rc-{name}-${{ github.ref_name }}"
Path(environ["GITHUB_ENV"]).write_text(f"ANACONDA_ORG_LABEL={label}")
- name: Create & Upload
uses: conda/actions/canary-release@1e442e090ad28c9b0f85697105703a303320ffd1
with:
package-name: ${{ github.event.repository.name }}
subdir: ${{ matrix.subdir }}
anaconda-org-channel: conda-canary
anaconda-org-label: ${{ env.ANACONDA_ORG_LABEL }}
anaconda-org-token: ${{ secrets.ANACONDA_ORG_CONDA_CANARY_TOKEN }}