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zshiqiang authored Apr 18, 2024
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# OMLT_CAMD

This repository is the official implementation of the paper ["Augmenting optimization-based molecular design with graph neural networks"](https://arxiv.org/abs/2312.03613).
This repository is the official implementation of the paper ["Augmenting optimization-based molecular design with graph neural networks"](https://doi.org/10.1016/j.compchemeng.2024.108684).

The BibTex reference is:

@article{zhang2023,
title={Augmenting optimization-based molecular design with graph neural networks},
@article{zhang2024,
title = {Augmenting optimization-based molecular design with graph neural networks},
author= {Shiqiang Zhang and Juan S. Campos and Christian Feldmann and Frederik Sandfort and Miriam Mathea and Ruth Misener},
journal={arXiv preprint arXiv:2312.03613},
year = {2023},
journal = {Computers & Chemical Engineering},
volume = {186},
pages = {108684},
year = {2024},
issn = {0098-1354},
doi = {https://doi.org/10.1016/j.compchemeng.2024.108684},
}


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To train a GNN on the preprocessed dataset, run this command (using banana odor as an example):

```
python model_training_banana.py
python model_training_banana.py $seed_gnn
```

where seed_gnn is the random seed for training GNN.

## Optimization

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