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fix bug map_mutations_to_subclonal_segments #154

fix bug map_mutations_to_subclonal_segments

fix bug map_mutations_to_subclonal_segments #154

Triggered via push July 12, 2024 16:10
Status Success
Total duration 23m 53s
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pkgdown.yaml

on: push
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1 error and 19 warnings
pkgdown
No such keg: /opt/homebrew/Cellar/r
pkgdown
The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pkgdown
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pkgdown
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
pkgdown
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
pkgdown
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
pkgdown
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
pkgdown
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
pkgdown
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
pkgdown
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
pkgdown
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
pkgdown
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
pkgdown
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
pkgdown
/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:14: unexpected section header '\value'
pkgdown
/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:17: unexpected section header '\description'
pkgdown
/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:24: unexpected section header '\examples'
pkgdown
/Users/runner/work/CNAqc/CNAqc/man/plot_SBS.Rd:33: unexpected END_OF_INPUT '
pkgdown
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
pkgdown
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!