bugfix driver annotations #157
Annotations
22 warnings
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The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Install dependencies
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
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Install dependencies
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
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Install dependencies
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
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Install dependencies
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
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Install dependencies
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
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Install dependencies
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
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Install dependencies
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
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Install dependencies
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
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Install dependencies
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
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Check
plot_SBS.Rd:14: unexpected section header '\value'
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plot_SBS.Rd:17: unexpected section header '\description'
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plot_SBS.Rd:24: unexpected section header '\examples'
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plot_SBS.Rd:33: unexpected END_OF_INPUT '
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Found the following significant warnings:
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Found the following file with non-ASCII characters:
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'::' or ':::' imports not declared from:
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prepare_Rd: augment_with_vep.Rd:15-17: Dropping empty section \value
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Check
Codoc mismatches from documentation object 'annotate_variants':
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Undocumented arguments in documentation object 'as_maftools_obj'
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Run r-lib/actions/setup-pandoc@v1
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
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The ubuntu-18.04 environment is deprecated, consider switching to ubuntu-20.04(ubuntu-latest), or ubuntu-22.04 instead. For more details see https://github.com/actions/virtual-environments/issues/6002
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