re-install monocle3 and cicero

cantinilab · Jul 16, 2024 · 43cc9a7 · 43cc9a7
1 parent 3fe663a
commit 43cc9a7
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -40,6 +40,17 @@ jobs:
  reticulate::py_install("hummuspy", envname = "r-reticulate", pip=TRUE)
  shell: Rscript {0}
 
+ - name: ubuntu setup for Monocle3
+ run: sudo apt-get install libgdal-dev libgeos-dev libproj-dev
+
+ - name: Install Monocle3
+ run: devtools::install_github('cole-trapnell-lab/monocle3')
+ shell: Rscript {0}
+
+ - name: Install Cicero
+ run: devtools::install_github("cole-trapnell-lab/cicero-release", ref = "monocle3")
+ shell: Rscript {0}
+
  - name: Build site
  run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
  shell: Rscript {0}