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98 followers · 67 following
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  • Portland, OR
  • 19:44 (UTC -07:00)

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@BigelowLab @bioconda @metagenome-atlas
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brwnj/README.md

Solving complex issues with Nextflow, Javascript, Python, and anything else necessary to interpret and communicate.

Pinned

  1. quinlan-lab/bedqc quinlan-lab/bedqc Public

    BED QC tool (in the making)

    HTML 15 1

  2. brentp/seqcover brentp/seqcover Public

    seqcover allows users to view coverage for hundreds of genes and dozens of samples

    Nim 49 4

  3. covviz covviz Public

    Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

    HTML 56 7

  4. covdist covdist Public

    simple coverage distribution profile of aligned samples. useful for sequencing center feedback and topoffs.

    HTML 4 1

  5. idplot idplot Public

    compare sequences to a shared root reference sequence.

    HTML 24 4

  6. smoove-nf smoove-nf Public

    Nextflow implementation of the smoove workflow and other tools for SV calling and QC

    Python 12 2