elaborated on help for --cutoff info about using the value before log…

…2 transformation Former-commit-id: e8735fe
broadinstitute · May 10, 2018 · 1495d46 · 1495d46
1 parent 1496356
commit 1495d46
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/inferCNV.R b/scripts/inferCNV.R
@@ -179,7 +179,7 @@ pargs <- optparse::add_option(pargs, c("--cutoff"),
  metavar="Cutoff",
  help=paste("A number >= 0 is expected. A cut off for",
  "the average expression of genes to be used",
- "for CNV inference. [Default %default]"))
+ "for CNV inference (use the value before log2 transformation). [Default %default]"))
 
 pargs <- optparse::add_option(pargs, c("--transform"),
  type="logical",