docs: handy scripts

docs/handy-scripts.md

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+# Handy scripts
+
+## GEO submission
+
+1. Login to GEO using Google
+2. Login to danGPU and change path to where the files are located
+   1. It's either `~/Brickman/projects/` or `~/ucph/ndir/SUN-RENEW-Brickman/`
+3. Download and update [GEO template](https://www.ncbi.nlm.nih.gov/geo/info/seq.html).
+   1. NOTE: always make sure you use the latest version
+4. Click `Transfer files` and copy the login information for the ftp
+5. Adjust the variable from above step
+
+**NOTE**: before running the command below, make sure you are already in the
+folder and you see all the folder/files you want to upload. It will make the
+steps below simpler.
+
+```bash
+# we run tmux session in case we loose connection
+tmux new -s geo
+
+# this loges you to FTP
+sftp [email protected]
+password: <PASSWORD>
+
+cd uploads/<FOLDER>
+mkdir <RNAseq>
+cd <RNAseq>
+mput *
+```