Pinned

1. GAlibrate GAlibrate Public

   Parameter estimation and model calibration using Genetic Algorithm optimization in Python.

   Python 8 2

2. pysb-pkpd pysb-pkpd Public

   PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.

   Jupyter Notebook 3 4

3. NTBEL/PARM NTBEL/PARM Public

   PAR2 Activation and calcium signaling Reaction Model in PySB

   Python

4. NTBEL/diffusion-fit NTBEL/diffusion-fit Public

   Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.

   Python

5. LoLab-MSM/PyBILT LoLab-MSM/PyBILT Public

   Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

   Python 24 10

6. LoLab-MSM/Gleipnir LoLab-MSM/Gleipnir Public

   Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling

   Python 3 2