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Merge daphne-dev #15

Closed
wants to merge 55 commits into from
Closed

Merge daphne-dev #15

wants to merge 55 commits into from

Commits on Jun 22, 2023

  1. testthat folder

    @bbitarello
    bbitarello committed Jun 22, 2023
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Commits on Jun 23, 2023

  1. testing work

    @daphnehanse11
    daphnehanse11 committed Jun 23, 2023
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Commits on Jun 27, 2023

  1. Update ncd1.R

    @bbitarello
    bbitarello committed Jun 27, 2023
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Commits on Jun 28, 2023

  1. testing 123

    @daphnehanse11
    daphnehanse11 committed Jun 28, 2023
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Commits on Jul 3, 2023

  1. simplify ncd1

    @bbitarello
    bbitarello committed Jul 3, 2023
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  2. pending daphne check

    @bbitarello
    bbitarello committed Jul 3, 2023
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Commits on Jul 6, 2023

  1. Major update 

    Fixed: parse_vcf, ncd1, ncd2, .vcf_ncd1, .vcf_ncd2, read_vcf
    @bbitarello
    bbitarello committed Jul 6, 2023
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  2. Merge pull request #4 from bitarellolab/bbita-dev 

    Bbita dev
    @bbitarello
    bbitarello authored Jul 6, 2023
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Commits on Jul 7, 2023

  1. Update vcf_ncd1.R

    @daphnehanse11
    daphnehanse11 committed Jul 7, 2023
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  2. Merge branch 'master' into DaphneDev

    @daphnehanse11
    daphnehanse11 authored Jul 7, 2023
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  3. readme

    @bbitarello
    bbitarello committed Jul 7, 2023
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Commits on Jul 10, 2023

  1. testing

    @daphnehanse11
    daphnehanse11 committed Jul 10, 2023
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Commits on Jul 11, 2023

  1. more global variables

    @daphnehanse11
    daphnehanse11 committed Jul 11, 2023
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Commits on Jul 17, 2023

  1. even more tests

    @daphnehanse11
    daphnehanse11 committed Jul 17, 2023
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Commits on Jul 18, 2023

  1. tests for ncd1

    @daphnehanse11
    daphnehanse11 committed Jul 18, 2023
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Commits on Jul 19, 2023

  1. readme

    @bbitarello
    bbitarello committed Jul 19, 2023
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Commits on Jul 20, 2023

  1. many updates 

    to parse_vcf, ncd1, and ncd2. See dev notes and also comments in code for next steps
    @bbitarello
    bbitarello committed Jul 20, 2023
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  2. Update ncd1.R

    @bbitarello
    bbitarello committed Jul 20, 2023
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  3. Merge branch 'bbita-dev' into DaphneDev

    @daphnehanse11
    daphnehanse11 authored Jul 20, 2023
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  4. Merge pull request #6 from bitarellolab/DaphneDev 

    Daphne dev
    @daphnehanse11
    daphnehanse11 authored Jul 20, 2023
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  5. changes to ncd1 

    Please see changes in ncd1 and notes for dev.
    @bbitarello
    bbitarello committed Jul 20, 2023
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  6. Update ncd1.R

    @bbitarello
    bbitarello committed Jul 20, 2023
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  7. .

    @bbitarello
    bbitarello committed Jul 20, 2023
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Commits on Jul 21, 2023

  1. more changes to ncd1 and some to ncd2

    @bbitarello
    bbitarello committed Jul 21, 2023
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  2. Merge pull request #7 from bitarellolab/bbita-dev 

    Bbita dev
    @daphnehanse11
    daphnehanse11 authored Jul 21, 2023
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  3. test changes

    @daphnehanse11
    daphnehanse11 committed Jul 21, 2023
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  4. commented out

    @daphnehanse11
    daphnehanse11 committed Jul 21, 2023
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Commits on Jul 24, 2023

  1. updates and bug fixes

    @daphnehanse11
    daphnehanse11 committed Jul 24, 2023
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Commits on Jul 25, 2023

  1. test for ncd1

    @daphnehanse11
    daphnehanse11 committed Jul 25, 2023
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  2. Update ncd2.R

    @bbitarello
    bbitarello committed Jul 25, 2023
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  3. Merge pull request #8 from bitarellolab/bbita-dev 

    Update ncd2.R
    @daphnehanse11
    daphnehanse11 authored Jul 25, 2023
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Commits on Jul 26, 2023

  1. man updates

    @daphnehanse11
    daphnehanse11 committed Jul 26, 2023
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Commits on Sep 18, 2023

  1. updates

    @daphnehanse11
    daphnehanse11 committed Sep 18, 2023
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Commits on Sep 25, 2023

  1. trying to update read_vcf 

    not working yet but i'm trying lol
    @daphnehanse11
    daphnehanse11 committed Sep 25, 2023
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Commits on Sep 29, 2023

  1. it works now! 

    i added the argument to filter by person to read.vcf
    @daphnehanse11
    daphnehanse11 committed Sep 29, 2023
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  2. pos.range 

    also has a position range now
    @daphnehanse11
    daphnehanse11 committed Sep 29, 2023
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Commits on Oct 4, 2023

  1. Update modified_read_vcf.R

    @daphnehanse11
    daphnehanse11 committed Oct 4, 2023
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  2. oush

    @daphnehanse11
    daphnehanse11 committed Oct 4, 2023
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Commits on Nov 5, 2023

  1. FINALLY 

    this took so long to make this work omg. it finally filters properly
    @daphnehanse11
    daphnehanse11 committed Nov 5, 2023
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Commits on Nov 6, 2023

  1. notes

    @daphnehanse11
    daphnehanse11 committed Nov 6, 2023
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Commits on Nov 13, 2023

  1. functions

    @daphnehanse11
    daphnehanse11 committed Nov 13, 2023
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Commits on Feb 18, 2024

  1. made the lil markdown file

    @daphnehanse11
    daphnehanse11 committed Feb 18, 2024
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Commits on Feb 23, 2024

  1. bal

    @daphnehanse11
    daphnehanse11 committed Feb 23, 2024
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Commits on Feb 26, 2024

  1. install code

    @daphnehanse11
    daphnehanse11 committed Feb 26, 2024
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Commits on Feb 29, 2024

  1. Update renv.lock

    @daphnehanse11
    daphnehanse11 committed Feb 29, 2024
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Commits on Mar 1, 2024

  1. tutorial

    @bbitarello
    bbitarello committed Mar 1, 2024
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Commits on Mar 4, 2024

  1. Merge branch 'master' of https://github.com/bitarellolab/balselr into… 

    … DaphneDev
    @bbitarello
    bbitarello committed Mar 4, 2024
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  2. Merge pull request #10 from bitarellolab/DaphneDev 

    Daphne dev
    @bbitarello
    bbitarello authored Mar 4, 2024
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  3. Create r.yml

    @bbitarello
    bbitarello authored Mar 4, 2024
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  4. cleanup2

    @bbitarello
    bbitarello committed Mar 4, 2024
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  5. Delete xaringan-themer.css

    @bbitarello
    bbitarello committed Mar 4, 2024
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  6. renv

    @bbitarello
    bbitarello committed Mar 4, 2024
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  7. fix warning about 'user nobody'

    @bbitarello
    bbitarello committed Mar 4, 2024
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Commits on Mar 18, 2024

  1. Merge pull request #11 from bitarellolab/bbitarello-patch-1 

    Create r.yml
    @bbitarello
    bbitarello authored Mar 18, 2024
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Commits on Apr 18, 2024

  1. Update NAMESPACE

    @bbitarello
    bbitarello committed Apr 18, 2024
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