Skip to content

A fast Wilcoxon rank sum test and auROC analysis python package for single cell RNA-seq

Notifications You must be signed in to change notification settings

bioqxu/wilcoxauc

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

11 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

wilcoxauc

A fast Wilcoxon rank sum test and auROC analysis python package for single cell RNA-seq

Usage

from wilcoxauc import wilcoxauc,top_markers

res = wilcoxauc(adata, group_name='leiden_0.5', layer='X')
res_top_markers = top_markers(res, ntop='all', auc_min=0.6, logfc_min=0.25, pval_max=0.01, padj_max=0.01)

About

A fast Wilcoxon rank sum test and auROC analysis python package for single cell RNA-seq

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages