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Update mg-scripts to take advantage of Illumina file spec #79

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charles-cowart opened this issue May 2, 2022 · 0 comments
Open

Update mg-scripts to take advantage of Illumina file spec #79

charles-cowart opened this issue May 2, 2022 · 0 comments
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mg-scripts uses regex in several locations when it might be better to generate lists of files based on known sample-names and the expected files based on the following information:

https://support.illumina.com/help/BaseSpace_OLH_009008/Content/Source/Informatics/BS/NamingConvention_FASTQ-files-swBS.htm
@charles-cowart charles-cowart self-assigned this May 2, 2022
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