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Update prokbert to 0.0.46 #53153

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Jan 9, 2025
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18 changes: 11 additions & 7 deletions recipes/prokbert/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,37 +1,40 @@
{% set name = "prokbert" %}
{% set version = "0.0.44" %}
{% set version = "0.0.46" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/prokbert-{{ version }}.tar.gz
sha256: 19a6c9890c7689d795a8898061d48e7023b64226388c1c67f2f68a91c42a5012
sha256: 580a4b8845f32c5327617772bd964fb3c7a68f3d6643f56cfebe704d70570920

build:
number: 0
noarch: python
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
run_exports:
- {{ pin_subpackage('prokbert', max_pin="x.x") }}

requirements:
host:
- python >=3.10
- pip
- setuptools
run:
- python >=3.10
- pytorch
- torchvision
- biopython
- pandas >=2.0.0
- pandas >=1.5.0
- datasets >=2.0.1
- scikit-learn >=1.2.2
- scipy >=1.10.0
- scipy >=1.10.1
- transformers >=4.23
- tables >=3.8.0
- pytables >=3.8.0
- h5py >=3.7.0
- python-blosc2
- accelerate >=0.20.1

test:
imports:
Expand All @@ -43,7 +46,8 @@ about:
license_family: MIT
license_file: LICENSE
summary: 'ProkBERT is a genomic language model specifically designed for microbiome applications. It leverages the power of machine learning to decipher complex microbial interactions, predict functionalities, and uncover novel patterns in extensive datasets. The ProkBERT model family, built on transfer learning and self-supervised methodologies, capitalizes on the abundant genomic data available.'
doc_url: https://prokbert.readthedocs.io/en/latest/
doc_url: https://prokbert.readthedocs.io/en/latest
dev_url: https://github.com/nbrg-ppcu/prokbert

extra:
recipe-maintainers:
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