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Add novae package #52855

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Dec 20, 2024
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66 changes: 66 additions & 0 deletions recipes/novae/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,66 @@
{% set name = "novae" %}
{% set version = "0.2.2" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/novae-{{ version }}.tar.gz
sha256: c043ebfd36d9818566d91d681ad076f899b8715f9d7cf6b6dd0cdaab1a3dfb96

build:
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
number: 0
run_exports:
- {{ pin_subpackage('novae', max_pin="x") }}
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requirements:
host:
- python >=3.10,<3.13
- poetry-core >=1.0.0
- pip
run:
- python >=3.10,<3.13
- scanpy >=1.9.8
- lightning >=2.2.1
- pytorch >=2.2.1
- pytorch_geometric >=2.5.2
- huggingface_hub >=0.24.0
- safetensors >=0.4.3
- pandas >=2.0.0
run_constrained:
- wandb >=0.17.2
- black >=22.8.0
- flake8 >=7.0.0
- isort >=5.10.1
- pytest >=7.1.3
- pytest-cov >=5.0.0
- pyyaml >=6.0.1
- ipykernel >=6.22.0
- ipywidgets >=8.1.2
- mkdocs-material >=8.5.6
- mkdocs-jupyter >=0.21.0
- mkdocstrings >=0.19.0
- mkdocstrings-python >=0.7.1
- pydantic >=2.8.2
- pre-commit >=3.8.0

test:
imports:
- novae
commands:
- pip check
requires:
- pip

about:
home: https://mics-lab.github.io/novae/
summary: Graph-based foundation model for spatial transcriptomics data
license: BSD-3-Clause
license_file: LICENSE

extra:
recipe-maintainers:
- quentinblampey
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