Add recipe for stripepy-hic (#52945)

* Add recipe for stripepy-hic

* Bugfix

* Bugfix

* Bugfix

* Relax pins

* Depend on seaborn-base instead of seaborn

* Skip tests covering plots

Tests are likely failing due to missing/different fonts

* Avoid downloading unnecessary test files

* Suppress warnings issued by pytest

recipes/stripepy-hic/meta.yaml

@@ -0,0 +1,63 @@
+{% set name = "stripepy-hic" %}
+{% set version = "0.0.2" %}
+{% set sha256 = "4e0e14f365334095b9af04874b01bae25fb385560add5f6f0bc91b35f757e556" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.org/packages/source/{{ name[0] }}/{{ name|replace("-", "_") }}/{{ name|replace("-", "_") }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: python
+  entry_points:
+    - stripepy = stripepy:main
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -v"
+  run_exports:
+    - {{ pin_subpackage('stripepy-hic', max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3.9
+    - pip
+    - hatchling
+    - hatch-vcs
+  run:
+    - h5py >=3
+    - hictkpy >=1
+    - matplotlib-base >=3.8
+    - numpy
+    - pandas >=2
+    - scikit-learn
+    - scipy
+    - seaborn-base >=0.13
+
+about:
+  home: https://github.com/paulsengroup/StripePy
+  license: MIT
+  license_file: LICENCE
+  summary: "StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning"
+  dev_url: https://github.com/paulsengroup/StripePy
+  doc_url: https://github.com/paulsengroup/StripePy/blob/main/README.md
+
+test:
+  requires:
+    - curl
+    - perl-digest-md5
+    - pytest>=8
+  source_files:
+    - test/*
+  imports:
+    - stripepy
+
+extra:
+  recipe-maintainers:
+    - robomics
+    - rea1991
+    - jonnings
+  identifiers:
+    - biotools:stripepy-hic
+    - doi:10.5281/zenodo.14394041

recipes/stripepy-hic/run_test.sh

@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+
+# Download test datasets
+mkdir -p test/data
+
+curl -L 'https://zenodo.org/records/14517632/files/4DNFI9GMP2J8.stripepy.mcool?download=1' -o test/data/4DNFI9GMP2J8.mcool
+curl -L 'https://zenodo.org/records/14517632/files/results_4DNFI9GMP2J8_v1.hdf5?download=1' -o test/data/results_4DNFI9GMP2J8_v1.hdf5
+
+# Checksum datasets
+echo 'a17d08460c03cf6c926e2ca5743e4888  test/data/4DNFI9GMP2J8.mcool' > checksums.md5
+echo '632b2a7a6e5c1a24dc3635710ed68a80  test/data/results_4DNFI9GMP2J8_v1.hdf5' >> checksums.md5
+
+md5sum -c checksums.md5
+
+# Test CLI
+stripepy --help
+stripepy --version
+
+# Run automated test suites
+"$PYTHON" -m pytest test/ -m unit -v --disable-pytest-warnings
+"$PYTHON" -m pytest test/ -m end2end -v -k 'not TestStripePyPlot' --disable-pytest-warnings