tables -> pytables

recipes/prokbert/meta.yaml

@@ -12,26 +12,29 @@ source:
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation -vvv"
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   run_exports:
     - {{ pin_subpackage('prokbert', max_pin="x.x") }}
 
 requirements:
   host:
     - python >=3.10
     - pip
+    - setuptools
   run:
     - python >=3.10
     - pytorch
     - torchvision
     - biopython
-    - pandas >=2.0.0
+    - pandas >=1.5.0
     - datasets >=2.0.1
     - scikit-learn >=1.2.2
-    - scipy >=1.10.0
+    - scipy >=1.10.1
     - transformers >=4.23
-    - tables >=3.8.0
+    - pytables >=3.8.0
     - h5py >=3.7.0
+    - blosc2 >=2.2.8
+    - accelerate >=0.20.1
 
 test:
   imports:
@@ -43,7 +46,8 @@ about:
   license_family: MIT
   license_file: LICENSE
   summary: 'ProkBERT is a genomic language model specifically designed for microbiome applications. It leverages the power of machine learning to decipher complex microbial interactions, predict functionalities, and uncover novel patterns in extensive datasets. The ProkBERT model family, built on transfer learning and self-supervised methodologies, capitalizes on the abundant genomic data available.'
-  doc_url: https://prokbert.readthedocs.io/en/latest/
+  doc_url: https://prokbert.readthedocs.io/en/latest
+  dev_url: https://github.com/nbrg-ppcu/prokbert
 
 extra:
   recipe-maintainers: