Update sdm to 3.08 (#52994)

* Update sdm to 3.07 * Test without the old patch * Update sdm to 3.08 * Update Makefile patch --------- Co-authored-by: Nicola Soranzo <[email protected]>
bioconda · Jan 2, 2025 · 5eb1b61 · 5eb1b61
1 parent 40106eb
commit 5eb1b61
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diff --git a/recipes/sdm/meta.yaml b/recipes/sdm/meta.yaml
@@ -1,15 +1,15 @@
 {% set name = "sdm" %}
-{% set version = "2.18" %}
+{% set version = "3.08" %}
 
 package:
   name: {{ name }}
   version: {{ version }}
 
 source:
   url: https://github.com/hildebra/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 4ae8d1b2be6c3571e9c2db964421e5065255dff209f8e060d43b843be0f04e82
+  sha256: 122fe90a715c0f8b7cc28e930fe8edd165a0e7d25763d8753a3ae57b8ee58736
   patches:
-    - sdm_1.83.patch
+    - sdm_3.08.patch
 
 build:
   number: 0

diff --git a/recipes/sdm/sdm_1.83.patch → recipes/sdm/sdm_3.08.patch b/recipes/sdm/sdm_1.83.patch → recipes/sdm/sdm_3.08.patch
@@ -1,30 +1,27 @@
 diff --git a/Makefile b/Makefile
-index df16bce..5967e96 100644
+index a22c3ed..53e2310 100644
 --- a/Makefile
 +++ b/Makefile
-@@ -15,13 +15,22 @@ program_INCLUDE_DIRS := ./
- program_LIBRARY_DIRS := ${CPATH}
- program_LIBRARIES :=
+@@ -15,13 +15,19 @@ isa_FLAGS2 :=
+ #isa_FLAGS := -D_isa1gzip
+ #isa_FLAGS2 := -lisal 
 
--
--CPPFLAGS += -O3 -std=c++17 -lrt
+-CPPFLAGS += -O3 -std=c++17 -lrt $(isa_FLAGS)
 +UNAME := $(shell uname)
-+CPPFLAGS += -O3 -std=c++17 -pthread
++CPPFLAGS += -O3 -std=c++17 -pthread $(isa_FLAGS)
+ #-D_isa1gzip
  CPPFLAGS += $(foreach includedir,$(program_INCLUDE_DIRS),-I$(includedir))
-+ifeq ($(UNAME), Darwin)
-+# 'shared_mutex' is available from macOS 10.12
-+CPPFLAGS += -mmacosx-version-min=10.12
-+endif
  CXXFLAGS=-D__STDC_CONSTANT_MACROS
 -LDFLAGS +=   $(foreach librarydir,$(program_LIBRARY_DIRS),-L$(librarydir)) -pthread -Wl,--whole-archive -lpthread -Wl,--no-whole-archive
+-LDFLAGS += $(foreach library,$(program_LIBRARIES),-l$(library))  
 +LDFLAGS += $(foreach librarydir,$(program_LIBRARY_DIRS),-L$(librarydir))
- LDFLAGS += $(foreach library,$(program_LIBRARIES),-l$(library))
- LDLIBS += -lz
++LDLIBS += $(foreach library,$(program_LIBRARIES),-l$(library))
+ LDLIBS += -lz $(isa_FLAGS2)
 +ifeq ($(UNAME), Linux)
 +LDLIBS += -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive
 +else
 +LDLIBS += -lpthread
 +endif
+ #-lisal 
 
- .PHONY: all clean distclean