fix sortchic barcodes #99
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: test | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| pull_request: | |
| branches: | |
| - develop | |
| - main | |
| jobs: | |
| build: | |
| name: Test installation | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [ "3.10" ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| channels: conda-forge,bioconda,defaults | |
| miniconda-version: "latest" | |
| auto-activate-base: false | |
| activate-environment: sincei | |
| environment-file: requirements.yml | |
| - name: Check environment | |
| run: | | |
| conda info | |
| - name: List tools | |
| run: | | |
| conda list | |
| - name: Install sincei | |
| run: | | |
| pip install . | |
| which sincei | |
| sincei --help | |
| - name: Generate coverage report | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| pip install pytest | |
| pip install pytest-cov | |
| pytest --cov=./ | |
| - name: Upload coverage to Codecov | |
| if: matrix.os == 'ubuntu-latest' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: true | |
| flags: unittests | |
| name: codecov-umbrella | |
| verbose: true | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: psf/black@stable |