run pytest only on ubuntu #88
Workflow file for this run
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| name: test | ||
| on: | ||
| push: | ||
| branches: | ||
| - develop | ||
| pull_request: | ||
| branches: | ||
| - develop | ||
| - main | ||
| jobs: | ||
| build: | ||
| name: Test installation | ||
| runs-on: ${{ matrix.os }} | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| strategy: | ||
| max-parallel: 5 | ||
| matrix: | ||
| os: [ubuntu-latest, macos-latest] | ||
| python-version: [ "3.10" ] | ||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v2 | ||
| - name: Set up conda | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| channels: conda-forge,bioconda,defaults | ||
| auto-activate-base: false | ||
| activate-environment: sincei | ||
| environment-file: requirements.yml | ||
| - name: Check environment | ||
| run: | | ||
| conda info | ||
| - name: List tools | ||
| run: | | ||
| conda list | ||
| - name: Install sincei | ||
| run: | | ||
| pip install . | ||
| which sincei | ||
| sincei --help | ||
| - name: Generate coverage report | ||
| if: matrix.os == 'ubuntu-latest' | ||
| run: | | ||
| pip install pytest | ||
| pip install pytest-cov | ||
| pytest --cov=./ | ||
| - name: Upload coverage to Codecov | ||
| if: matrix.os == 'ubuntu-latest' | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| env_vars: OS,PYTHON | ||
| fail_ci_if_error: true | ||
| flags: unittests | ||
| name: codecov-umbrella | ||
| verbose: true | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: psf/black@stable | ||
