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Release v1.9.0

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@dustinbleile dustinbleile released this 22 Feb 22:38
· 102 commits to master since this release
09b33b2

What's Changed

New Contributors

Full Changelog: v1.8.0...v1.9.0

Release v1.9.0
New Features:

  • get_statements_from_variants - helper function added.
  • get_term_list - helper function added.
  • get_rid - helper function added.
  • get_pharmacogenomic_info - helper function added.
  • get_cancer_predisposition_info - helper function added.
  • Added constants PHARMACOGENOMIC_RELEVANCE_TERMS and PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST
    Bugfix:
  • Ignore gene name version in get_equivalent_features. Eg. NM_033360.4 should match 'NM_033360' and 'KRAS'.
    Improvements:
  • get_preferred_gene_name - moved to genes.py
  • move CHOMOSOMES and PREFERRED_GENE_SOURCE to constants.py
  • add retries on connection failure
    added tests:
  • test_get_pharmacogenomic_info
  • test_get_cancer_predisposition_info
  • reduced runtime of longest test
  • add match test