Release v1.9.0
What's Changed
- SDEV-3342 - add get_statements_from_variants function - adapted from … by @dustinbleile in #74
- Feature/sdev 3256 gene list updates pharma cancer predisp by @dustinbleile in #72
- Bugfix/GitHub actions timeouts by @elewis2 in #76
- Bugfix/GitHub actions timeouts turn tests on by @dustinbleile in #77
- Release/v1.9.0 test updates helper funcs by @dustinbleile in #78
New Contributors
Full Changelog: v1.8.0...v1.9.0
Release v1.9.0
New Features:
- get_statements_from_variants - helper function added.
- get_term_list - helper function added.
- get_rid - helper function added.
- get_pharmacogenomic_info - helper function added.
- get_cancer_predisposition_info - helper function added.
- Added constants PHARMACOGENOMIC_RELEVANCE_TERMS and PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST
Bugfix: - Ignore gene name version in get_equivalent_features. Eg. NM_033360.4 should match 'NM_033360' and 'KRAS'.
Improvements: - get_preferred_gene_name - moved to genes.py
- move CHOMOSOMES and PREFERRED_GENE_SOURCE to constants.py
- add retries on connection failure
added tests: - test_get_pharmacogenomic_info
- test_get_cancer_predisposition_info
- reduced runtime of longest test
- add match test