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Release v1.9.0
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New Features:
 * get_statements_from_variants - helper function added.
 * get_term_list - helper function added.
 * get_rid - helper function added.
 * get_pharmacogenomic_info - helper function added.
 * get_cancer_predisposition_info - helper function added.
 * Added constants PHARMACOGENOMIC_RELEVANCE_TERMS and PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST
Bugfix:
 * Ignore gene name version in get_equivalent_features. Eg. NM_033360.4 should match 'NM_033360' and 'KRAS'.
Improvements:
 * get_preferred_gene_name - moved to genes.py
 * move CHOMOSOMES and PREFERRED_GENE_SOURCE to constants.py
 * add retries on connection failure
added tests:
 * test_get_pharmacogenomic_info
 * test_get_cancer_predisposition_info
 * reduced runtime of longest test
 * add match test
Github Workflow Updates:
 * Run in parallel
 * Drop Python 3.6 testing
 * actions/checkout@v3
 * actions/setup-python@v3
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dustinbleile committed Feb 22, 2023
1 parent cb87d17 commit d5a9932
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion setup.cfg
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ include_trailing_comma = true
[metadata]
name = graphkb
url = https://github.com/bcgsc/pori_graphkb_python
version = 1.8.0
version = 1.9.0
author_email = [email protected]
description = python adapter for interacting with the GraphKB API
long_description = file: README.md
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