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ntJoin v1.1.0

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@lcoombe lcoombe released this 30 May 22:57
· 19 commits to master since this release
a62b241
  • Release version v1.1.0
  • Introduces new 'overlap' feature, which is enabled by default (overlap=True)
    • For adjacent sequences that have a putative overlap based on gap distance estimates:
      • Compute minimizers with a lower k and w (to increase sensitivity), and create an undirected minimizer graph using minimizers found in the putative overlap region (in multiplicity of 1 in both sequences)
      • Use the minimizer graph to anchor the sequences to each other, and use the coordinates to trim the overlapping sequence
    • This feature reduces the incidence of local misassemblies and duplications, created when overlapping sequences are naively joined end-to-end
  • Update btllib to v1.4.4
  • General bugfixes and documentation updates