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The script can perform naive sequence matching, calculate the GC content and plot the GC distribution graph from a fasta file

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avinashkarkada/naiveSEQ_hits-GC_content-GC_dist_graph-

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naiveSEQ_hits-GC_content-GC_dist_graph-

The script can perform naive sequence matching, calculate the GC content and plot the GC distribution graph from a fasta file

HOW TO USE:

  1. Paste the script in the same folder as the fasta file
  2. Run the script
  3. Enter the sequence pattern to be matched with the fasta file
  4. Enter the name of the fasta file in the directory
  5. Press "Get seq hits" button to get the positions of the matches
  6. Press "Get GC content" button to get the GC content and press the graph plotting button for the GC distribution graph

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The script can perform naive sequence matching, calculate the GC content and plot the GC distribution graph from a fasta file

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