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Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

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SSA

Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Requirements

  • python >=3.7
  • numpy
  • pandas
  • matplotlib
  • pyyaml

Command line usage

The main program kinetics.py can be used as below

python kinetics.py -f <input yaml file>

For more help

python kinetics.py --h

Input File

A sample input file can be found inside /src directory.

License

GNU GPL V3

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Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

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