309 make pip test work in m1 mac (#310)

* update * fix test * update * update * Update CHANGES --------- Co-authored-by: Oliver Beckstein <[email protected]>
alchemistry · Apr 7, 2023 · 2804d33 · 2804d33
1 parent 639969e
commit 2804d33
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diff --git a/CHANGES b/CHANGES
@@ -21,6 +21,8 @@ Fixes
  - Fix the dE method in u_nk2series to use the difference between two
  lambda columns instead of using the next lambda column or the previous
  column for the last window (issue #299, PR #300).
+ - work around hanging tests on Mac M1 by using Path.glob instead of glob.glob
+ in ABFE workflow (issue #309, PR #310).
 
 
 12/12/2022 xiki-tempula, orbeckst

diff --git a/src/alchemlyb/workflows/abfe.py b/src/alchemlyb/workflows/abfe.py
@@ -1,7 +1,7 @@
 import logging
 import os
-from glob import glob
 from os.path import join
+from pathlib import Path
 
 import matplotlib.pyplot as plt
 import numpy as np
@@ -81,8 +81,8 @@ def __init__(
  f"{suffix} under directory {dir} produced by "
  f"{software}"
  )
- reg_exp = dir + "/**/" + prefix + "*" + suffix
- self.file_list = list(glob(reg_exp, recursive=True))
+ reg_exp = "**/" + prefix + "*" + suffix
+ self.file_list = list(map(str, Path(dir).glob(reg_exp)))
 
  if len(self.file_list) == 0:
  raise ValueError(f"No file has been matched to {reg_exp}.")