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29 Open 92 Closed
29 Open 92 Closed
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Issues list

Avoid making dense matrix in create_cistopic_object_from_fragments reduces memory 50X [PERFORMANCE]
#148 opened Jun 15, 2024 by davidhbrann
1
Cargo, the Rust package manager, is not installed or is not on PATH.
#147 opened Jun 7, 2024 by massonix
2
pyGREAT gives error: AttributeError: 'NoneType' object has no attribute 'text
#143 opened May 16, 2024 by MubasherMohammed
2
Memory issue even after bigmem
#142 opened May 14, 2024 by TingTingShao
7
linux installation error
#128 opened Apr 7, 2024 by kakaisi
1
NameError: name 'subset_list' is not defined
#124 opened Mar 28, 2024 by w1973145618
1
NameError: name 'Tuple' is not defined
#123 opened Mar 27, 2024 by w1973145618
3
CalledProcessError: Command '['/home/taxue/mywork/pycisTopic/Mallet-202108/bin/mallet', 'import-file', '--preserve-case', '--keep-sequence', '--token-regex', '\\S+', '--input', './scratch/leuven/330/vsc33053/ray_spill/mallet/tutorial/corpus.txt', '--output', './scratch/leuven/330/vsc33053/ray_spill/mallet/tutorial/corpus.mallet']' returned non-zero exit status 127.Bug report [BUG]
#121 opened Mar 25, 2024 by w1973145618
1
export_pseudobulk never generates pseudobulk files
#117 opened Mar 21, 2024 by SITRR
14
Topics has been calculated to number 350, but the loglikelihood is still not optimal.
#114 opened Mar 8, 2024 by YH-Zheng
3
Where can I find the "MO_GEX_seurat_Cortex.loom" file used in the multiple multiome tutorial?
#113 opened Feb 28, 2024 by mossconfuse
1
Running pycisTopic on very large datasets [PERFORMANCE]
#106 opened Jan 23, 2024 by simozhou
5
Create a cistopic object using ATAC-seq count matrix (peak by cell)?
#101 opened Nov 1, 2023 by CYorick
2
Error when running plot_topic() - Unable to determine Axes to steal space for Colorbar
#99 opened Sep 29, 2023 by solvi808
Numba ConstantInferenceError in find_diff_features [BUG]
#94 opened Sep 19, 2023 by josephineyates
6
run_umap errors [BUG]
#92 opened Sep 13, 2023 by jklvrt
4
Bug report [BUG]
#91 opened Sep 7, 2023 by TomVuod
2
TypeError: 'NoneType' object does not support item assignment - binarize_topics() function
#83 opened Aug 8, 2023 by Sebdumas
5
Ray processes failed to startup
#80 opened Jul 11, 2023 by crsky1023
5
Bug report [BUG] AttributeError: module 'numpy' has no attribute 'int' group_pr.to_bigwig
#79 opened May 22, 2023 by etiennedanis
2
Bug report [BUG] list index out of error when running get_consensus_peaks
#73 opened Apr 6, 2023 by midichlorianrich
1
Ray processes failed to startup during run_cgs_models
#71 opened Mar 3, 2023 by ehcilc
1
Running pycisTopic on large datasets?
#66 opened Feb 6, 2023 by klgoss
8
plot_topic_qc_metrics: NameError: name 'log' is not defined [BUG]
#65 opened Feb 4, 2023 by alexlenail
cell_topic_heatmap: NotImplementedError: isna is not defined for MultiIndex [BUG]
#64 opened Feb 4, 2023 by alexlenail
1
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