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Infer cell-cell communications based on feed-forward neural network

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scDeepTalk

Infer contact-dependent cell-cell communications with ligand-receptor interactions based on a deep learning model of feed-forward neural network.

data/example_data.RData mouse intestine data for training the model
model/mouse_intestine.rds pre-trained model of mouse intestine
R/scDeeptalk.R R script for run scDeepTalk pipeline

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R > 3.6
Packages: h2o

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Infer cell-cell communications based on feed-forward neural network

deep-learning single-cell-rna-seq single-cell-analysis feed-forward-neural-networks cell-cell-interaction cell-cell-communication

GPL-3.0 license

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