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YangLabHKUST · Nov 19, 2021 · 7483cb6 · 7483cb6
1 parent 17e8c97
commit 7483cb6
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/portal/utils.py b/portal/utils.py
@@ -154,6 +154,7 @@ def calculate_mixing_metric(data, meta, methods, k=5, max_k=300, subsample=True)
  subsample_idx = np.random.choice(data.shape[0], 50000, replace=False)
  data = data[subsample_idx]
  meta = meta.iloc[subsample_idx]
+ meta.index = np.arange(len(subsample_idx))
  lowdim = data
 
  nbrs = NearestNeighbors(n_neighbors=max_k, algorithm='kd_tree').fit(lowdim)