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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    234 364

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 190 93

  3. dragonstar2019 dragonstar2019 Public

    135 97

  4. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 102 8

  5. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 101 35

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 89 55

Repositories

Showing 10 of 82 repositories
  • LongReadSum Public
    WGLab/LongReadSum’s past year of commit activity
    C++ 13 MIT 2 5 0 Updated Dec 23, 2024
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 0 Updated Dec 21, 2024
  • PhenoGPT Public
    WGLab/PhenoGPT’s past year of commit activity
    Jupyter Notebook 19 MIT 6 2 0 Updated Dec 13, 2024
  • PhenoSV Public

    PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.

    WGLab/PhenoSV’s past year of commit activity
    Python 16 MIT 4 2 0 Updated Dec 12, 2024
  • NanoRepeat Public

    NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

    WGLab/NanoRepeat’s past year of commit activity
    Python 17 MIT 1 4 0 Updated Dec 6, 2024
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 5 MIT 0 2 0 Updated Nov 27, 2024
  • AmpBinner Public

    A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data

    WGLab/AmpBinner’s past year of commit activity
    Python 10 MIT 2 4 0 Updated Nov 27, 2024
  • LlamaDx Public

    LlamaDx is an advanced LLM technique, pretrained on LLama 3.2 models, designed to providing some predictions and medical knowledges for doctors, nurses and patients through clear and comprehensive explanations. It is an AI chatbot where the users can ask question and provide relevant information for disease diagnosis.

    WGLab/LlamaDx’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 24, 2024
  • NanoCaller Public

    Variant calling tool for long-read sequencing data

    WGLab/NanoCaller’s past year of commit activity
    Python 102 MIT 8 30 0 Updated Nov 17, 2024
  • PhenoGPT2 Public

    PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.

    WGLab/PhenoGPT2’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Oct 30, 2024
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