renamed docker/ to Docker/

TrinityCTAT · Oct 17, 2019 · 7f3d024 · 7f3d024
1 parent 255a941
commit 7f3d024
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Showing 8 changed files with 1 addition and 1 deletion.
diff --git a/docker/.dockerignore → Docker/.dockerignore b/docker/.dockerignore → Docker/.dockerignore
diff --git a/docker/Dockerfile → Docker/Dockerfile b/docker/Dockerfile → Docker/Dockerfile
diff --git a/docker/VERSION.txt → Docker/VERSION.txt b/docker/VERSION.txt → Docker/VERSION.txt
diff --git a/docker/build_docker.sh → Docker/build_docker.sh b/docker/build_docker.sh → Docker/build_docker.sh
diff --git a/docker/install_R_packages.R → Docker/install_R_packages.R b/docker/install_R_packages.R → Docker/install_R_packages.R
diff --git a/docker/make_simg.sh → Docker/make_simg.sh b/docker/make_simg.sh → Docker/make_simg.sh
diff --git a/docker/push_docker.sh → Docker/push_docker.sh b/docker/push_docker.sh → Docker/push_docker.sh
diff --git a/src/annotate_PASS_reads.py b/src/annotate_PASS_reads.py
@@ -120,7 +120,7 @@ def evaluate_PASS_reads(i, bamFile):
  # Run Samtools view on the BAM file with the given location
 
  cmd = "samtools view {} {}".format(bamFile, bamposition)
- sam_output = subprocess.check_output(cmd, shell=True, encoding='utf8')
+ sam_output = subprocess.check_output(cmd, shell=True).decode()
 
  # separate the Samtools view output by lines (rstrip to remove last \n)
  sam_output = sam_output.rstrip().split("\n")