#Major update

NOTE: These scripts are irrelevant now, as we've had issues with serving up FASTQ files from our campus cluster.

You therefore have two choices:

• Download our BAM files from the SRA using the accession numbers in the MBE paper. If you need the FASTQ files, you can reconstruct them from the BAM files.
• Download the data via Google Drive, which will be quite slow: Link

The latter option could be quite slow...

#Old README content Shell scripts to download data from Rogers et al. Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans.

These citation for these data is:

Rogers, R. L., J. M. Cridland, L. Shao, T. Hu, P. Andolfatto and K. R. Thornton (accepted, Molecular Biology and Evolution) Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans.

A preprint of the paper is on arXiv.