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Human 1.14.0

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@haowang-bioinfo haowang-bioinfo released this 25 Feb 16:46
· 804 commits to main since this release
  • Fix: remove 149 non-metabolic genes, that are discovered using the GPT-3 language model, from following subsystems:
    • #485 remove non-metabolic Isolated (#481), and Glycosphingolipid metabolism related genes (#484)
    • #480 remove non-metabolic genes from Protein assembly and degradation (#476), Glycerophospholipid metabolism (#477), Cholesterol biosynthesis pathway (#478)
    • #474 remove two rxns wrongly annotated with Phe metabolismand #472 and remove non metabolic gene from aromatic amino acid metabolism (#471)
    • #467 remove non-metabolic genes from amino acid metabolism (#463), (#464), (#465), (#466)
    • #461 remove non-metabolic genes from Fructose and mannose metabolism (#457)
    • #455 remove non-metabolic genes from Inositol phosphate metabolism (#452)
    • #453 remove non-metabolic genes from Nucleotide metabolism pathway (#449)
    • #451 remove ST20 from Pentose phosphate pathway (#447)
    • #450 remove non-transporter genes from transport reactions (#444)
    • #445 remove non-metabolic genes from glycolysis pathway (#443)
    • #442 removal of MEIKIN from fatty acid activation reactions (#426)
  • Feature (PR #482):
    • refactor extractAllianceGenomeOrthologs from reading JSON to TSV file, as discussed in #15 of Mouse-GEM
  • Feature/Style (PR #479):
  • Feature (PR #475):
    • improve issue and PR templates
  • Fix(PR #462):
    • add subunit NDUFA7 to complex I, as explained in #446
  • Fix (PR #460):
    • correct wrongly associated CHEBI annotation to MAM03882, as reported in Mouse-GEM issue #21
  • Fix (PR #459):
    • changed subsystems for 2 exchange rxns, modified name 7 transport rxns, as discussed in #456