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Human 1.13.0
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@haowang-bioinfo haowang-bioinfo released this 23 Dec 16:03
· 864 commits to main since this release
v1.13.0
20dcd0c
  • Features (PR #440, #437):
    • add compartment information to genes.tsv based on SwissProt annotation, Cell Atlas, and deeploc2 prediction, as discussed in #436
  • Fixes (PR #435):
    • update HMDB IDs to version 4 format and fix ID for MAM03055r, as suggested #434
  • Fixes (PR #432):
    • remove the reaction MAR02517 and 4 metabolites (MAM02444l, MAM02678l, MAM00890l, and MAM01596l) that were involved in no other reactions, to address issue #381
  • Fixes (PR #431, #428):
    • systematically format PMIDs, to resolve inconsistency reported in #430, #427
  • Features (PR #429):
    • add cis-aconitate decarboxylase reaction according to Mouse-GEM issue #20, and change reversibility for MAR09498, as reported in #425
  • Features (PR #423):
    • add an install script to resolve #136
  • Features (PR #422):
    • allow prepHumanModelForftINIT to take the paths to reactions.tsv and essential tasks as optional parameters, as proposed in #401
  • Fixes (PR #420):
    • enables importYaml to get rid of empty and non-essential fields
  • Fixes (PR #419):
    • curate GPR rule for MAR04926, as discussed in #417
  • Fixes (PR #415):
    • set MAR05998 to be reversible, as proposed in #412
  • Fixes (PR #405, #403):
    • evaluate and remove duplicated reactions, to address the issue discussed in #345
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