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human 0.3.1

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@haowang-bioinfo haowang-bioinfo released this 23 Sep 12:17
  • Features (PR #23):
    • Conduct extensive metabolite curations for providing curated formulas and charges with script updateMetChargesFormulas.m
    • Unify MetaNetX ids for humanGEM metabolites based on HMR2 and Recon3D association
    • Add function addMetCompsField.m
  • Fixes (PR #24):
    • Miscellaneous curations in reactions, genes and related fields that are detailed in miscModelCurationScript_20180921.m
      • Update EC number to HMR_4365
      • 8 reaction grRules are modified
      • Reverse reaction direction for HMR_4964
      • reactions HMR_1572 and HMGCOAtx are removed
    • Add function removeReactionsFull.m
  • Chore:
    • Update compartment-free array structure metAssocHMR2Recon3.mat with comprehensive external associations (e.g. KEGG, BiGG, HMDB, ChEBI)