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chore: new version
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haowang-bioinfo committed Oct 17, 2020
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -26,7 +26,7 @@ This repository contains the latest version of Human-GEM, a human genome-scale m

|Taxonomy | Template Model | Reactions | Metabolites| Genes |
| ------------- |:-------------:|:-------------:|:-------------:|:-----:|
|_Homo sapiens_ | HMR2, Recon3D, iHsa| 13416| 8458| 3628|
|_Homo sapiens_ | HMR2, Recon3D, iHsa| 13101| 8400| 3626|


### Administration
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Binary file modified model/Human-GEM.mat
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10 changes: 5 additions & 5 deletions model/Human-GEM.txt
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Expand Up @@ -1394,13 +1394,13 @@ HMR_6914 4 m01826m + 8 m02039m + m02630m -> 4 m01824m + 2 m02040m + 4 m02039i
HMR_6916 m01285m + m02751m + 3 m02039i -> m01371m + 2 m02039m + m02040m ENSG00000099624 and ENSG00000110955 and ENSG00000116459 and ENSG00000124172 and ENSG00000135390 and ENSG00000152234 and ENSG00000154518 and ENSG00000154723 and ENSG00000156411 and ENSG00000159199 and ENSG00000165629 and ENSG00000167283 and ENSG00000167863 and ENSG00000169020 and ENSG00000173915 and ENSG00000198899 and ENSG00000228253 and ENSG00000241468 and ENSG00000241837 0.00 1000.00 0.00
HMR_6918 2 m01824m + 2 m02039m + m03102m -> 2 m01826m + m03103m + 4 m02039i ENSG00000010256 and ENSG00000127540 and ENSG00000140740 and ENSG00000156467 and ENSG00000164405 and ENSG00000169021 and ENSG00000173660 and ENSG00000179091 and ENSG00000184076 and ENSG00000198727 0.00 1000.00 0.00
HMR_6921 5 m02039m + m02553m + m03103m -> m02552m + m03102m + 4 m02039i ENSG00000004779 and ENSG00000023228 and ENSG00000065518 and ENSG00000090266 and ENSG00000099795 and ENSG00000109390 and ENSG00000110717 and ENSG00000115286 and ENSG00000119013 and ENSG00000119421 and ENSG00000125356 and ENSG00000128609 and ENSG00000130414 and ENSG00000131495 and ENSG00000136521 and ENSG00000139180 and ENSG00000140990 and ENSG00000145494 and ENSG00000147123 and ENSG00000147684 and ENSG00000151366 and ENSG00000158864 and ENSG00000160194 and ENSG00000164258 and ENSG00000165264 and ENSG00000166136 and ENSG00000167792 and ENSG00000168653 and ENSG00000170906 and ENSG00000174886 and ENSG00000178127 and ENSG00000183648 and ENSG00000184752 and ENSG00000184983 and ENSG00000186010 and ENSG00000189043 and ENSG00000198695 and ENSG00000198763 and ENSG00000198786 and ENSG00000198840 and ENSG00000198886 and ENSG00000198888 and ENSG00000212907 and ENSG00000213619 0.00 1000.00 0.00
HMR_3960 2 m02039c + 2 m02631c -> m02041c + m02630c ENSG00000109610 or ENSG00000112096 or ENSG00000142168 or ENSG00000285441 0.00 1000.00 0.00
HMR_3960 2 m02039c + 2 m02631c -> m02041c + m02630c ENSG00000109610 or ENSG00000112096 or ENSG00000142168 0.00 1000.00 0.00
HMR_3980 2 m02041c -> 2 m02040c + m02630c ENSG00000121691 0.00 1000.00 0.00
HMR_3982 2 m02041m -> 2 m02040m + m02630m ENSG00000121691 0.00 1000.00 0.00
HMR_4767 m01396r + m01397r -> 2 m01398r 0.00 1000.00 0.00
HMR_6608 m02147c <=> m02149c -1000.00 1000.00 0.00
HMR_8409 2 m02039s + 2 m02631s -> m02041s + m02630s ENSG00000109610 0.00 1000.00 0.00
HMR_8410 2 m02039m + 2 m02631m -> m02041m + m02630m ENSG00000112096 or ENSG00000285441 0.00 1000.00 0.00
HMR_8410 2 m02039m + 2 m02631m -> m02041m + m02630m ENSG00000112096 0.00 1000.00 0.00
HMR_8413 2 m02039n + 2 m02631n -> m02041n + m02630n ENSG00000142168 0.00 1000.00 0.00
HMR_8415 2 m02039p + 2 m02631p -> m02041p + m02630p ENSG00000142168 0.00 1000.00 0.00
HMR_0156 m01334c + m01412c + m02759c <=> m01371c + m01410c + m01597c ENSG00000005187 or ENSG00000066813 or ENSG00000166743 or ENSG00000183549 or ENSG00000183747 or ENSG00000215009 -1000.00 1000.00 0.00
Expand Down Expand Up @@ -3350,7 +3350,7 @@ HMR_8173 m02014g + m03107g -> m02009g + m02039g + m03106g ENSG00000179913 0.
HMR_8174 m01592g + m02009g -> m01590g + m01944g + m02039g ENSG00000070731 0.00 1000.00 0.00
HMR_8175 m01592g + m01941g -> m01590g + m02029g + m02039g ENSG00000160408 0.00 1000.00 0.00
HMR_8176 m01592g + m02031g -> m01590g + m02025g + m02039g ENSG00000070731 0.00 1000.00 0.00
HMR_8177 m01592g + m02025g -> m01590g + m02018g + m02039g ENSG00000070731 0.00 1000.00 0.00
HMR_8177 m01592g + m02025g -> m01590g + m02018g + m02039g ENSG00000101638 0.00 1000.00 0.00
HMR_8178 m01592g + m02030g -> m01590g + m02024g + m02039g ENSG00000160408 0.00 1000.00 0.00
HMR_8179 m01592g + m02015g -> m01590g + m01947g + m02039g ENSG00000111728 0.00 1000.00 0.00
HMR_8180 m01592g + m01947g -> m01590g + m02033g + m02039g ENSG00000101638 0.00 1000.00 0.00
Expand Down Expand Up @@ -4418,7 +4418,7 @@ HMR_6542 m01371c + m02750c -> m00552c + m01285c + m02039c ENSG00000078142 0.
HMR_6543 m00552c + m02040c -> m02750c + m02751c ENSG00000150712 or ENSG00000171100 0.00 1000.00 0.00
HMR_6544 m00552c + m01371c -> m00555c + m01285c + m02039c ENSG00000115020 0.00 1000.00 0.00
HMR_6545 m00555c + m02040c -> m00552c + m02751c ENSG00000003987 or ENSG00000054148 or ENSG00000063601 or ENSG00000087053 or ENSG00000102043 or ENSG00000111077 or ENSG00000111696 or ENSG00000112367 or ENSG00000117598 or ENSG00000125458 or ENSG00000126821 or ENSG00000137770 or ENSG00000139304 or ENSG00000139505 or ENSG00000144048 or ENSG00000158079 or ENSG00000160539 or ENSG00000163082 or ENSG00000163719 or ENSG00000165458 or ENSG00000165688 or ENSG00000198825 or ENSG00000198881 or ENSG00000205309 or ENSG00000205808 or ENSG00000211456 or ENSG00000213920 0.00 1000.00 0.00
HMR_6546 m01371c + m02750c -> m00553c + m01285c + m02039c ENSG00000038210 or ENSG00000143393 or ENSG00000155252 or ENSG00000241973 or ENSG00000281028 0.00 1000.00 0.00
HMR_6546 m01371c + m02750c -> m00553c + m01285c + m02039c ENSG00000038210 or ENSG00000143393 or ENSG00000155252 or ENSG00000241973 0.00 1000.00 0.00
HMR_6547 m00553c + m02040c -> m02750c + m02751c ENSG00000003987 or ENSG00000054148 or ENSG00000063601 or ENSG00000087053 or ENSG00000102043 or ENSG00000111077 or ENSG00000111696 or ENSG00000112367 or ENSG00000117598 or ENSG00000125458 or ENSG00000126821 or ENSG00000137770 or ENSG00000139304 or ENSG00000139505 or ENSG00000144048 or ENSG00000158079 or ENSG00000160539 or ENSG00000163082 or ENSG00000163719 or ENSG00000165458 or ENSG00000165688 or ENSG00000198825 or ENSG00000205309 or ENSG00000205808 or ENSG00000211456 or ENSG00000213920 0.00 1000.00 0.00
HMR_6548 m00553c + m01371c -> m00551c + m01285c + m02039c ( ENSG00000011405 and ENSG00000133056 ) or ENSG00000139144 or ENSG00000141506 0.00 1000.00 0.00
HMR_6549 m00551c + m02040c -> m00552c + m02751c ENSG00000040933 or ENSG00000109452 0.00 1000.00 0.00
Expand Down Expand Up @@ -4495,7 +4495,7 @@ HMR_8825 m00554r + m01371r -> m01285r + m02039r + m02735r ( ENSG00000011405 an
HMR_8826 m00554n + m01371n -> m01285n + m02039n + m02736n ENSG00000150867 or ENSG00000166908 or ENSG00000276293 0.00 1000.00 0.00
HMR_8827 m01371r + m02750r -> m00552r + m01285r + m02039r ( ENSG00000011405 and ENSG00000133056 ) or ENSG00000139144 0.00 1000.00 0.00
HMR_8829 m01371n + m02750n -> m00552n + m01285n + m02039n ENSG00000078142 0.00 1000.00 0.00
HMR_8830 m01371n + m02750n -> m00553n + m01285n + m02039n ENSG00000038210 or ENSG00000143393 or ENSG00000155252 or ENSG00000241973 or ENSG00000281028 0.00 1000.00 0.00
HMR_8830 m01371n + m02750n -> m00553n + m01285n + m02039n ENSG00000038210 or ENSG00000143393 or ENSG00000155252 or ENSG00000241973 0.00 1000.00 0.00
HMR_8831 m01371n + m02750n -> m00554n + m01285n + m02039n ENSG00000107242 or ENSG00000143398 or ENSG00000167103 or ENSG00000186111 0.00 1000.00 0.00
HMR_8833 m02040n + m02750n -> m02039n + m02173n + m00237n ENSG00000182621 0.00 1000.00 0.00
HMR_8835 m00531c + 2 m02040c -> m00521c + m02039c + m02751c + m02759c ENSG00000068745 or ENSG00000145725 or ENSG00000161896 or ENSG00000168781 or ENSG00000176095 0.00 1000.00 0.00
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